Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq160 114 3e-20 >seq160 Length=904994 Score = 114 bits (126), Expect = 3e-20 Identities = 206/298 (69%), Gaps = 5/298 (2%) Strand=Plus/Minus Query 101902 TTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATT 101961 ||| || |||| |||||| || || |||||||||||||| || || || |||| || Sbjct 788979 TTTCGCTGAACGAATTGTAGCTTTCGCTGCAGTTGAAGGGATATTTTTCTCTGGTAGTTT 788920 Query 101962 CGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 ||| | || |||||| | ||||| | ||| | |||| ||| | || | ||| ||||| Sbjct 788919 TGCAGCTATATTCTGGTTGAAGAAGCGTGGTTTGATGCCAGGTTTAACTTTCTCAAATGA 788860 Query 102022 GTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGG 102081 || ||||| ||||| |||||| | ||| | |||||||| ||| | || || | Sbjct 788859 ATTGATTTCCAGGGATGAAGGTTTGCATTGTGACTTTGCCTGCCTTCTTTTCTCTCA--- 788803 Query 102082 TTTTGTTGATACCCCATCAAGAGAAAGGATTCTTGAA-ATTGTCACTGAAGCCGTCCGAA 102140 ||| ||| | | || || |||| | | || ||| || | ||| || || || Sbjct 788802 TTTAGTTCAGAAACCGTCGCAAGAACGTA-TCACGAATATCATTTGTGATGCTGTTAAAA 788744 Query 102141 TTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAA 102198 | |||||||||||||| || | | |||||||| | ||| | |||||||| || || Sbjct 788743 TCGAACAAGAATTTCTAACTGAAGCTCTGCCTGTCAGTTTAATCGGAATGAATTGTAA 788686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989274720055315