Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq160 232 8e-56 seq74 188 9e-43 >seq160 Length=904994 Score = 232 bits (256), Expect = 8e-56 Identities = 509/760 (67%), Gaps = 11/760 (1%) Strand=Plus/Plus Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCAT--CATTTCACAATTCATTCCTATG 33467 ||| ||||| || || | || |||||||| ||| |||| |||||||||||| || Sbjct 788646 CAACCTATCAGCAACATACTCAATATATGTACACATTGCATT--ACAATTCATTCCGATT 788703 Query 33468 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATA 33527 | | || || ||||| |||| |||||||||||||| || || |||| || Sbjct 788704 AAACTGACAGGCAGAGCTTCAGTTAGAAATTCTTGTTCGATTTTAACAGCATCACAAATG 788763 Query 33528 ATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCG 33587 ||| | | ||||| |||| || | |||||| || | | || || Sbjct 788764 ATATTCGTGATACGTTCTTGCGACGGTTTCTGAACTAAATGAGAGAAAAGAAGGCAGGCA 788823 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 || || || |||| ||| || || || ||| ||||| || || || || | || ||| Sbjct 788824 AAGTCACAATGCAAACCTTCATCCCTGGAAATCAATTCATTTGAGAAAGTTAAACCTGGC 788883 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 || | |||||||| || | ||| ||||| | || || || || || || || ||| Sbjct 788884 ATCAAACCACGCTTCTTCAACCAGAATATAGCTGCAAAACTACCAGAGAAAAATATCCCT 788943 Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCC 33762 || |||||||| || || | || || || | || || ||| | || ||||| Sbjct 788944 TCAACTGCAGCGAAAGCTACAATTCGTTCAGCGAAAGTGGAGCTTT--TGGAGCTTATCC 789001 Query 33763 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33822 | || | ||||||| ||||| || |||||||||||||||||| ||||| || || | Sbjct 789002 AATTGAGGGCCCAATTCGCCTTTTTCGCTACACAAGGCATCGTTTCGATGGCGTTGAACA 789061 Query 33823 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33882 ||| | |||||| || || | | ||| || || |||| || |||||||||||| | Sbjct 789062 AATATTCTTTTTCTGTAGGGTCCTGTATATAGGTTTCTATCAGAATACTATACATTTCAG 789121 Query 33883 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 33942 | |||||||| || || || || ||||| ||||| || || | ||| || | ||||| | Sbjct 789122 AGTGAATGTTCTCCATAGCTATTTGAAAACCGTAAAAGCAGCGAGCTTCTGGTATCTGAA 789181 Query 33943 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAA 34002 | || || |||| || |||| |||||||| || || |||||| || || |||| Sbjct 789182 CCTCCTGACTGAATCTCTCGACTAAGTTTTCATTGACAATACCATCAGAAGCAGCGAAAA 789241 Query 34003 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 34062 | || || ||||| || |||| | ||||||| | || || ||||| | || Sbjct 789242 AGGCTAAAACATGCGAAATGAAATGTCTTTCGTCCTTAGAGAGATTCTTCCATTGCTTCG 789301 Query 34063 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 34122 ||| ||| | || ||||| || |||||| || || || ||||| | ||||||| Sbjct 789302 AGTCTCGAGACAGGTCAACTTCCTCAGTTGTCCAGAAGGAAGCTTCTGCTTCTTTATACT 789361 Query 34123 TATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | |||| || || | || || || || || | ||||| Sbjct 789362 TTGTCCATATATCTTTGTACTGAATAGGAAATACTACAAA 789401 >seq74 Length=1577532 Score = 188 bits (208), Expect = 9e-43 Identities = 705/1100 (64%), Gaps = 22/1100 (2%) Strand=Plus/Minus Query 62380 GGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62439 |||| || || ||||| || ||||| | || |||| ||||| ||||| ||| || | Sbjct 1093090 GGTTGACAACCTGGAACTCCCCAGAAAGGACCCTCCTGGTGTAGATATTCGAGGTGTAAG 1093031 Query 62440 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 | || | ||||| || || |||| ||||| ||||| || ||||| ||||| || || | Sbjct 1093030 GCTCGATGGACTCGTTGTTGCCCAGGATTTGCGCAGTAGACGCAGTAGGCATGGGAGCGA 1092971 Query 62500 CCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCC 62559 || || ||| | | || | | |||||| || || | | ||| | || Sbjct 1092970 GTAACAAGGAATTGCGTACCCCATGCTTGGCGATTTTCTCCTTCAAAGCAGACCAGTCCC 1092911 Query 62560 AAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTAC 62618 | ||||| | ||| ||| || || | ||||| || || | | || Sbjct 1092910 AGAGATCTGTCGGAGTAACGCCCCACATGTCGTACTGCAAGATACCTTTGCTTACAGGAC 1092851 Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678 ||| | || || ||| || || || ||||| ||||||| ||||||||||| | Sbjct 1092850 TG-CCTTCGTAGGTCGAATAAGGGCCGTCTTTCTCGGCTAGTTCGCAACTCGCCTCCAGG 1092792 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGG---GCTA 62735 || |||| || | |||||| ||||| | |||||| | | |||| || | |||| Sbjct 1092791 GCCGCGTAGTAGAGGGTTTCGAAGATTTGCTTATTCAAAA---GTGCCGCCTGTTCGCTA 1092735 Query 62736 TCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATA 62795 || || || | ||| || |||||||||||||| || || | || || ||||| Sbjct 1092734 TCGAAGGGCATGCGCATGAGGATGAACGCGTCCGCTAACCCCTGGATCCCGATTCCGATG 1092675 Query 62796 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62855 || | |||||| |||| || | || || || || || || || || | || || Sbjct 1092674 GGCCGGTGTCTCATATTCGACAGCCTCGCCTCGGGTATGGGGTAGTAGTTCACGTCGATT 1092615 Query 62856 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 62915 ||||| | | || ||| | | || || | || ||| || | ||||| || Sbjct 1092614 ATTTTGTCCAAGTTCCTGGCGACCACCTTAGTTATTTCTCTCAACTTCTGGAAATCGTAT 1092555 Query 62916 CGCCCA---TCTA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCT 62969 | || || ||||||||||||| | || | || |||| || ||||| || Sbjct 1092554 GTCTCACGATCGGGCTTTACAAACATGTTGACAGCGATGGAGGCCAAGTTGCACACAGCG 1092495 Query 62970 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTT 63029 ||||||| | | ||| | || ||||| ||||| | || || | |||||| || Sbjct 1092494 ACCTCATCGGGGGAGGTATACTCGATAATCTCCGTGCACAAGTTGCTGCTCTTGATCGTG 1092435 Query 63030 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 63089 || | ||| || || ||||| || |||| || |||||||| || || ||| | |||||| Sbjct 1092434 CCAAGATTCTGCTGGTTACTTTTCCTGTTGCAAGCATCCTTGTAGAGCATGTAAGGAGTA 1092375 Query 63090 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA--TTATAG 63147 ||||| || | ||| ||| | | || |||||||| ||| | || ||| || | | Sbjct 1092374 CCAGTCTCTACCTGGGATACAGTGATGGCTTTCCACACGTCACGTGCCGGTAACTGCCTG 1092315 Query 63148 ATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAA 63207 | | | | | ||| ||||| | ||| | || ||||| || ||||| Sbjct 1092314 A--CGAACTTGCCTTCAGCCTCGTAGCGTTCATAGAGCTTCTCAAACTCCTCGCCCCAGC 1092257 Query 63208 CATTGTCCA--ATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 63265 | || | || || | || ||| ||||||| ||||| |||||| ||| Sbjct 1092256 AAATGGAAAGCCCCTTGG--AGCGATGCGGGCACATCAGAGACCAAGTACCGTCAGCCTC 1092199 Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATG 63325 || | ||||| || | ||||| ||||| | ||| ||||| || || | | || Sbjct 1092198 GACCCTCTTCATGAACAAGTCAGGGATCCACATAGCGTAGAATAGTTCCCTGGCGCGATT 1092139 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 || || || || ||||| || || ||||||||| ||| ||| || | ||||||||| Sbjct 1092138 AATATCTTTCCCGGTGTTCTTCTTCAGGTCGAGGAACTCCAAAATGTCCGCATGCCACGG 1092079 Query 63386 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63445 || | ||| || || | | ||||| | ||||| ||||||||||| | ||| || || Sbjct 1092078 CTCTAGGTAAATAGCAAACGCCCCAGGTCTCTTGTTGCCTCCCTGATCGACGTACCTCGC 1092019 Query 63446 GGTGTTATTATAAACTCTCA 63465 || || || | || |||| Sbjct 1092018 CGTATTGTTGAACACCCTCA 1091999 Score = 183 bits (202), Expect = 4e-41 Identities = 704/1100 (64%), Gaps = 22/1100 (2%) Strand=Plus/Minus Query 62380 GGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62439 |||| || || ||||| || ||||| | || |||| ||||| ||||| ||| || | Sbjct 1096421 GGTTGACAACCTGGAACTCCCCAGAAAGGACCCTCCTGGTGTAGATATTCGAGGTGTAAG 1096362 Query 62440 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 | || | ||||| || || |||| ||||| ||||| || ||||| ||||| || || | Sbjct 1096361 GCTCGATGGACTCGTTGTTGCCCAGGATTTGCGCAGTAGACGCAGTAGGCATGGGAGCGA 1096302 Query 62500 CCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCC 62559 || || ||| | | || | | |||||| || || | | ||| | || Sbjct 1096301 GTAACAAGGAATTGCGTACCCCATGCTTGGCGATTTTCTCCTTCAAAGCAGACCAGTCCC 1096242 Query 62560 AAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTAC 62618 | ||||| | ||| ||| || || | ||||| || || | | || Sbjct 1096241 AGAGATCTGTCGGAGTAACGCCCCACATGTCGTACTGCAAGATACCTTTGCTTACAGGAC 1096182 Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678 ||| | || || ||| || || || ||||| ||||||| ||||||||||| | Sbjct 1096181 TG-CCTTCGTAGGTCGAATAAGGGCCGTCTTTCTCGGCTAGTTCGCAACTCGCCTCCAGG 1096123 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGG---GCTA 62735 || |||| || | |||||| || || | |||||| | | |||| || | |||| Sbjct 1096122 GCCGCGTAGTAGAGGGTTTCGAATATTTGCTTATTCAAAA---GTGCCGCCTGTTCGCTA 1096066 Query 62736 TCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATA 62795 || || || | ||| || |||||||||||||| || || | || || ||||| Sbjct 1096065 TCGAAGGGCATGCGCATGAGGATGAACGCGTCCGCTAACCCCTGGATCCCGATTCCGATG 1096006 Query 62796 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62855 || | |||||| |||| || | || || || || || || || || | || || Sbjct 1096005 GGCCGGTGTCTCATATTCGACAGCCTCGCCTCGGGTATGGGGTAGTAGTTCACGTCGATT 1095946 Query 62856 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 62915 ||||| | | || ||| | | || || | || ||| || | ||||| || Sbjct 1095945 ATTTTGTCCAAGTTCCTGGCGACCACCTTAGTTATTTCTCTCAACTTCTGGAAATCGTAT 1095886 Query 62916 CGCCCA---TCTA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCT 62969 | || || ||||||||||||| | || | || |||| || ||||| || Sbjct 1095885 GTCTCACGATCGGGCTTTACAAACATGTTGACAGCGATGGAGGCCAAGTTGCACACAGCG 1095826 Query 62970 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTT 63029 ||||||| | | ||| | || ||||| ||||| | || || | |||||| || Sbjct 1095825 ACCTCATCGGGGGAGGTATACTCGATAATCTCCGTGCACAAGTTGCTGCTCTTGATCGTG 1095766 Query 63030 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 63089 || | ||| || || ||||| || |||| || || ||||| || || ||| |||||||| Sbjct 1095765 CCAAGATTCTGCTGGTTACTTTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTATGGAGTA 1095706 Query 63090 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA--TTATAG 63147 ||||| || | ||| ||| | | || |||||||| ||| | || ||| || | | Sbjct 1095705 CCAGTCTCTACCTGGGATACAGTGATGGCTTTCCACACGTCACGTGCCGGTAACTGCCTG 1095646 Query 63148 ATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAA 63207 | | | | | ||| ||||| | ||| | || ||||| || ||||| Sbjct 1095645 A--CGAACTTGCCTTCAGCCTCGTAGCGTTCATAGAGCTTCTCAAACTCCTCGCCCCAGC 1095588 Query 63208 CATTGTCCA--ATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 63265 || | | || || | || ||| ||||||| ||||| |||||| ||| Sbjct 1095587 AATCGGAAAGCCCCTTGG--AGCGATGCGGGCACATCAGAGACCAAGTACCGTCAGCCTC 1095530 Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATG 63325 || | ||||| || | ||||| ||||| | ||| ||||| || || | | || Sbjct 1095529 GACCCTCTTCATGAACAAGTCAGGGATCCACATAGCGTAGAATAGTTCCCTGGCGCGATT 1095470 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 || || || || ||||| || || ||||||||| ||| ||| || | ||||||||| Sbjct 1095469 AATATCTTTCCCGGTGTTCTTCTTCAGGTCGAGGAACTCCAAAATGTCCGCATGCCACGG 1095410 Query 63386 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63445 || | ||| || || | | ||||| | ||||| ||||||||||| | ||| || || Sbjct 1095409 CTCTAGGTAAATAGCAAACGCCCCAGGTCTCTTGTTGCCTCCCTGATCGACGTACCTCGC 1095350 Query 63446 GGTGTTATTATAAACTCTCA 63465 || || || | || |||| Sbjct 1095349 CGTATTGTTGAACACCCTCA 1095330 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 63675 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA 63734 || || ||||| ||| ||||| || | || || || | | ||||| || | |||| Sbjct 1091792 AACAAAGTAGGGCTAGCATGCGTGAAATACTTCTCCGACATCAAGTTGTAAGTGTTAATA 1091733 Query 63735 GCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGT 63794 |||| |||||| || || || || || ||||| | ||| |||||||||||||| Sbjct 1091732 GCTGCGTCTATGTCTTCGCCGTGGATCCCGACCGCGACTCTCATCAACATGTGCTGAGGA 1091673 Query 63795 CTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 63854 | |||| | |||||| |||||| ||| | |||||| ||||| ||||| || || Sbjct 1091672 CGTTCAGCTATTTTGCCATTTATTCTCAGGAGGTAGGAACGCTCCAACGTTTTCAAGCCG 1091613 Query 63855 AAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 || || |||| || ||||||| ||||| || || ||| ||||| Sbjct 1091612 AAGTACGTGTAGGAGAAGTCTCTGTCGTAGATGATGCACGAGTTGAG 1091566 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 63675 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA 63734 || || ||||| ||| ||||| || | || || || | | ||||| || | |||| Sbjct 1095123 AACAAAGTAGGGCTAGCATGCGTGAAATACTTCTCCGACATCAAGTTGTAAGTGTTAATA 1095064 Query 63735 GCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGT 63794 |||| |||||| || || || || || ||||| | ||| |||||||||||||| Sbjct 1095063 GCTGCGTCTATGTCTTCGCCGTGGATCCCGACCGCGACTCTCATCAACATGTGCTGAGGA 1095004 Query 63795 CTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 63854 | |||| | |||||| |||||| ||| | |||||| ||||| ||||| || || Sbjct 1095003 CGTTCAGCTATTTTGCCATTTATTCTCAGGAGGTAGGAACGCTCCAACGTTTTCAAGCCG 1094944 Query 63855 AAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 || || |||| || ||||||| ||||| || || ||| ||||| Sbjct 1094943 AAGTACGTGTAGGAGAAGTCTCTGTCGTAGATGATGCACGAGTTGAG 1094897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629625560741040