Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq160 248 8e-61 seq74 134 1e-26 >seq160 Length=904994 Score = 248 bits (274), Expect = 8e-61 Identities = 528/787 (67%), Gaps = 5/787 (1%) Strand=Plus/Plus Query 11430 AGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAG 11489 |||||| | |||||| | || | | || ||||| || || | || ||||| | Sbjct 788618 AGACTTGATTACAACCAAGTTCCTTCAGCAACCTATCAGCAACATACTCAATATATGTAC 788677 Query 11490 ACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCT 11549 ||||| | ||||||||| || || | | || || | ||| | || | ||| || | Sbjct 788678 ACATTGCATTACAATTCATTCCGATTAAACTGACAGGCAGAGCTTCAGTTAGAAATTCTT 788737 Query 11550 TTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTA 11609 ||| || ||||| |||||| || || ||| ||| ||| | || ||| || | Sbjct 788738 GTTCGATTTTAACAGCATCACAAATGATATTCGTGATACGTTCTTGCGACGGTTTCTGAA 788797 Query 11610 ATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTA 11669 |||||| || | | || ||||| |||||||| |||||||| || || || | Sbjct 788798 CTAAATGAGAGAAAAGAAGGCAGGCAAAGTCACAATGCAAACCTTCATCCCTGGAAATCA 788857 Query 11670 GTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAG 11729 |||||| || || ||||| || |||||||| || || || || | ||| |||||||| | Sbjct 788858 ATTCATTTGAGAAAGTTAAACCTGGCATCAAACCACGCTTCTTCAACCAGAATATAGCTG 788917 Query 11730 CAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT 11789 |||| |||||| || ||||| || || || || || || ||||| | || ||| | Sbjct 788918 CAAAACTACCAGAGAAAAATATCCCTTCAACTGCAGCGAAAGCTACAATTCGTTCAGCGA 788977 Query 11790 AT----ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCAT 11845 | | ||| ||| |||||| || |||||||| || || || ||| || Sbjct 788978 AAGTGGAGCTT-TTGGAGCTTATCCAATTGAGGGCCCAATTCGCCTTTTTCGCTACACAA 789036 Query 11846 TCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTA 11905 ||| ||||| || ||||| || |||| ||||||| || || || ||| || Sbjct 789037 GGCATCGTTTCGATGGCGTTGAACAAATATTCTTTTTCTGTAGGGTCCTGTATATAGGTT 789096 Query 11906 TCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAG 11965 ||||| | | |||||||||||| || ||||| || ||||||||||||||||| || || Sbjct 789097 TCTATCAGAATACTATACATTTCAGAGTGAATGTTCTCCATAGCTATTTGAAAACCGTAA 789156 Query 11966 AAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTT 12025 || || || || |||| ||| || ||| | ||||| || |||| || ||||| Sbjct 789157 AAGCAGCGAGCTTCTGGTATCTGAACCTCCTGACTGAATCTCTCGACTAAGTTTTCATTG 789216 Query 12026 ACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCT 12085 |||||||||||| || || ||||| |||| | ||| || || | | ||||||| Sbjct 789217 ACAATACCATCAGAAGCAGCGAAAAAGGCTAAAACATGCGAAATGAAATGTCTTTCGTCC 789276 Query 12086 TTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAA 12145 |||| | || | ||| | | | ||| || | || ||||| ||| ||||| Sbjct 789277 TTAGAGAGATTCTTCCATTGCTTCGAGTCTCGAGACAGGTCAACTTCCTCAGTTGTCCAG 789336 Query 12146 AAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 || || ||| || ||||||| || |||| ||||| | |||| |||||| || | Sbjct 789337 AAGGAAGCTTCTGCTTCTTTATACTTTGTCCATATATCTTTGTACTGAATAGGAAATACT 789396 Query 12206 ACGAACC 12212 || |||| Sbjct 789397 ACAAACC 789403 >seq74 Length=1577532 Score = 134 bits (148), Expect = 1e-26 Identities = 503/781 (64%), Gaps = 7/781 (1%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| || || | || || || | || | || ||||||| || ||||| ||||| Sbjct 1093433 TCAACAGTAAACTGAATCGGCTTGGCAGCTGGCTTGGTTCTCAAGTAGTACATCCCAGTC 1093374 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || ||| | |||| || || || ||||| | ||| | |||| |||| || Sbjct 1093373 TTGAGACCCTTTTTCCACCCATAGAAGTGCATCGAAGACAGCGCTCCGTACGTAGCTTTC 1093314 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 || |||| || ||| || || ||||| || || || ||||| || || ||||| Sbjct 1093313 TCCATATGGATATTCAAGCTCTGGCTCTGATCGATGAAGGCCCCTCTATCCGCCGCCATG 1093254 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | |||| || || || |||||||| || || || || || ||| | ||||| Sbjct 1093253 TTGATAATAACCTTCTGCGAAATCTCCCACACGGTCTTGTAAATAGCTTTGAGGTTATCC 1093194 Query 37030 GGTAAATCTAA-ATGTT--GAATAGAACC-ATTATGTAACACAATTGTATTCTTTATGTC 37085 || | | ||||| | ||||| || | || | ||| ||||| ||| Sbjct 1093193 GGAATGCCGGGGATGTTTTGGATAGACCCGAAGTTGGCGAGGACTTGG-TTCTTCATGGT 1093135 Query 37086 ATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145 || | ||||| | |||| || | | |||||| | || |||||||| || Sbjct 1093134 ATCGTCCCACAAGGAGGCATCCGTTAGATCATTGATCAGGTGTTGGTTGACAACCTGGAA 1093075 Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205 || ||||| | || || || || || ||||| || || || || |||||||| || Sbjct 1093074 CTCCCCAGAAAGGACCCTCCTGGTGTAGATATTCGAGGTGTAAGGCTCGATGGACTCGTT 1093015 Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265 || | | ||||| | ||||| ||||||||||| || || | || | | ||| | Sbjct 1093014 GTTGCCCAGGATTTGCGCAGTAGACGCAGTAGGCATGGGAGCGAGTAACAAGGAATTGCG 1092955 Query 37266 CAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT 37325 | ||||| | ||| ||| || | || ||| ||||| | |||||| || | Sbjct 1092954 TACCCCATGCTTGGCGATTTTCTCCTTCAAAGCAGACCAGTCCCAGAGATCTGTCGGAGT 1092895 Query 37326 CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTC 37385 |||||| || || || | |||||||| || | ||| | | || ||| Sbjct 1092894 AACGCCCCACATGTCGTACTGCAAGATACCTTTGCTTACAGGACTGCCTTCGTAGGTCGA 1092835 Query 37386 ATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGT 37445 |||||| |||| | | |||||||||||||| | || || || || || || | || Sbjct 1092834 ATAAGGGCCGTCTTTCTCGGCTAGTTCGCAACTCGCCTCCAGGGCCGCGTAGTAGAGGGT 1092775 Query 37446 TTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAA-TGCATAGCCCAATA 37504 |||||| ||||| |||| || | | || | |||||||||||| |||| || || | Sbjct 1092774 TTCGAAGATTTGCTTATTCAAAAGTGCCGCCTGTTCGCTATCGAAGGGCAT-GCGCATGA 1092716 Query 37505 ATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAG 37564 || ||| | || || || ||||| | ||||| || ||||| | ||| || |||| | Sbjct 1092715 GGATGAACGCGTCCGCTAACCCCTGGATCCCGATTCCGATGGGCCGGTGTCTCATATTCG 1092656 Query 37565 A 37565 | Sbjct 1092655 A 1092655 Score = 127 bits (140), Expect = 2e-24 Identities = 296/444 (67%), Gaps = 2/444 (0%) Strand=Plus/Minus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 |||||| | || |||||||| || || ||||| | || || || || || ||||| Sbjct 1096428 AGGTGTTGGTTGACAACCTGGAACTCCCCAGAAAGGACCCTCCTGGTGTAGATATTCGAG 1096369 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || || || |||||||| || || | | ||||| | ||||| ||||||||||| Sbjct 1096368 GTGTAAGGCTCGATGGACTCGTTGTTGCCCAGGATTTGCGCAGTAGACGCAGTAGGCATG 1096309 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | || | | ||| | | ||||| | ||| ||| || | || | Sbjct 1096308 GGAGCGAGTAACAAGGAATTGCGTACCCCATGCTTGGCGATTTTCTCCTTCAAAGCAGAC 1096249 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || ||||| | |||||| || | |||||| || || || | |||||||| || Sbjct 1096248 CAGTCCCAGAGATCTGTCGGAGTAACGCCCCACATGTCGTACTGCAAGATACCTTTGCTT 1096189 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT 37422 | ||| | | || ||| |||||| |||| | | |||||||||||||| | Sbjct 1096188 ACAGGACTGCCTTCGTAGGTCGAATAAGGGCCGTCTTTCTCGGCTAGTTCGCAACTCGCC 1096129 Query 37423 TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCG 37482 || || || || || || | |||||||| ||||| |||| || | | || | |||| Sbjct 1096128 TCCAGGGCCGCGTAGTAGAGGGTTTCGAATATTTGCTTATTCAAAAGTGCCGCCTGTTCG 1096069 Query 37483 CTATCGAA-TGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACC 37541 |||||||| |||| || || | || ||| | || || || ||||| | ||||| || Sbjct 1096068 CTATCGAAGGGCAT-GCGCATGAGGATGAACGCGTCCGCTAACCCCTGGATCCCGATTCC 1096010 Query 37542 TATGGGTCTATGTTTCTTATTAGA 37565 ||||| | ||| || |||| || Sbjct 1096009 GATGGGCCGGTGTCTCATATTCGA 1095986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468381940931920