Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq318 109 5e-19 seq792 93.3 4e-14 seq74 91.5 1e-13 seq805 87.8 2e-12 >seq318 Length=663677 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| ||||| ||||| |||||||||||||| | Sbjct 605914 CCACCACGGAGACGGAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAGAC 605855 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || ||||| ||||| |||||| | ||| || || || || Sbjct 605854 AAGGTTCTGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGA 605795 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | ||||| | || | ||||||| || ||||| Sbjct 605794 ATTCCTTCCTTGTC-CTGAATTTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCCAC 605736 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| || || | ||||| || || || |||||| Sbjct 605735 TTCCAAGGTAATGGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCATA 605687 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | ||| || |||| |||||| ||||| |||||||||||||| Sbjct 606371 GCCTCCTCTGAGACGAAGAACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCTGA 606312 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||||| || ||||| ||||| |||||| | ||| || || || || Sbjct 606311 CAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGG 606252 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| |||||| ||| | | || | ||||||| || || || Sbjct 606251 AATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCGGATGGTTCAAC 606192 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| || || | ||||| || || || |||||| Sbjct 606191 TTCCAAGGTAATTGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCATA 606143 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| ||||| ||||| ||||||||||||| || Sbjct 606142 CCACCACGGAGACGAAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAAT--CTG 606085 Query 139598 ATTGTGCTCG--AGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || | ||| ||||| || ||||| |||||| |||||| | ||| || || || | Sbjct 606084 ATAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGG 606025 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | ||||| |||||||| |||||| ||| | | || | ||||| | || || | Sbjct 606024 GAATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAA 605965 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | ||||| || || || ||||| || || || ||||| Sbjct 605964 CTTCTAACGTTATGGTCTTTCCAGTTAAAGTTTTGACAAAGATCTGCAT 605916 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||| | || || |||||||||||||||||||| | Sbjct 605686 CCACCACGGAGACGAAGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTGAC 605627 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| || ||||| |||||| |||||| | ||| || || || || Sbjct 605626 AAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 605567 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || ||| || ||| | | || | ||||| | || || ||| Sbjct 605566 ATTCCTTCCTTATCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCAACC 605507 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || |||| |||||| || || || ||||| Sbjct 605506 TCAAGGGTGATAGTTTTACCAGTCAGCGTTTTCACAAAGATCTGCAT 605460 >seq792 Length=424820 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG--TCTTCGAGCTGTTTAC 139625 || ||||| || ||||| || || ||| | || |||| |||||||||||||| | Sbjct 97122 GTGGACTCCTTCTGAATATTGTAGTCGGAAAGAGT--TCGACCATCTTCGAGCTGTTTTC 97065 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTT 139685 |||| |||||| | ||||||||| || || || ||||| ||||| ||| || | Sbjct 97064 CAGCGAAGATCAATCTTTGCTGATCTGGGGGGATCCCTTCCTTGTCTTGGATCTTAGCCT 97005 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | | | ||| | ||||| | ||| || ||||| | ||| | ||||| || || | | Sbjct 97004 TGACGTTTTCGATGGTGTCAGAGGGTTCGACCTCGAGGGTGATGGTCTTACCCGTGAGTG 96945 Query 139746 TTTTTACGAATATTTGCAT 139764 |||| ||||| |||||||| Sbjct 96944 TTTTAACGAAAATTTGCAT 96926 >seq74 Length=1577532 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684 ||||||| || || || ||||||||||| || || || ||||||| | ||| | | Sbjct 1095860 TGTTGACAGCGATGGAGGCCAAGTTGCACACAGCGACCTCATCGGGGGAGGTATACTCGA 1095801 Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGC 153744 || |||| ||||| ||||||| || ||| ||| ||| || || ||||| | Sbjct 1095800 TAATCTCCGTGCACAAGTTGCTGCTCTTGATCGTGCCAAGATTCTGCTGGTTACTTTTCC 1095741 Query 153745 GGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTC 153787 ||| |||||||||||||| ||||||||||| || || || || Sbjct 1095740 TGTTGCAAGCGTCCTTGTAGAGCATGTATGGAGTACCAGTCTC 1095698 Score = 82.4 bits (90), Expect = 8e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684 ||||||| || || || ||||||||||| || || || ||||||| | ||| | | Sbjct 1092529 TGTTGACAGCGATGGAGGCCAAGTTGCACACAGCGACCTCATCGGGGGAGGTATACTCGA 1092470 Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGC 153744 || |||| ||||| ||||||| || ||| ||| ||| || || ||||| | Sbjct 1092469 TAATCTCCGTGCACAAGTTGCTGCTCTTGATCGTGCCAAGATTCTGCTGGTTACTTTTCC 1092410 Query 153745 GGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTC 153787 ||| ||||| |||||||| |||||||| || || || || || Sbjct 1092409 TGTTGCAAGCATCCTTGTAGAGCATGTAAGGAGTACCAGTCTC 1092367 >seq805 Length=567825 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| ||||| ||||| | || || ||| | |||||||||||| | | Sbjct 473816 CCACCACGGAGACGAAAAACCAAGTGGAGTGTGGATTCTCTCTGAATGTTATAAGCTGAC 473757 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| || ||||| ||||| |||||| | ||| || || || || Sbjct 473756 AAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGCGGA 473697 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| |||||||| |||||| ||| | | || | ||||| | || || || Sbjct 473696 ATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACT 473637 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || | ||||| || |||||||||||| Sbjct 473636 TCTAACGTTATGGTCTTTCCAGTTGAAGTTTTGACAAATATTTGCATA 473589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495912743885600