Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq160 280 1e-70 >seq160 Length=904994 Score = 280 bits (310), Expect = 1e-70 Identities = 556/815 (68%), Gaps = 6/815 (1%) Strand=Plus/Plus Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733 |||| || |||||| ||||| || || |||||||||| | ||||||||||| | || Sbjct 788620 ACTTGATTACAACCAAGTTCCTTCAGCAACCTATCAGCAACATACTCAATATATGTACAC 788679 Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793 ||| || ||||||||| || |||| | ||||| | | |||| |||||||| | Sbjct 788680 ATTGCATTACAATTCATTCCGATTAAACTGACAGGCAGAGCTTCAGTTAGAAATTCTTGT 788739 Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTT 13853 || || ||||| || || ||| | || ||| || | || || | | Sbjct 788740 TCGATTTTAACAGCATCACAAATGATATTCGTGATACGTTCTTGCGACGGTTTCTGAACT 788799 Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 | ||| |||| | || ||||| |||||||| | || ||||| || ||| | | Sbjct 788800 AAATGAGAGAAAAGAAGGCAGGCAAAGTCACAATGCAAACCTTCATCCCTGGAAATCAAT 788859 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 || ||||| || ||||| ||||||||||| || || || || ||||| ||||| || ||| Sbjct 788860 TCATTTGAGAAAGTTAAACCTGGCATCAAACCACGCTTCTTCAACCAGAATATAGCTGCA 788919 Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14033 || || || || ||||| || ||||||||||| || |||| | |||||| | || Sbjct 788920 AAACTACCAGAGAAAAATATCCCTTCAACTGCAGCGAAAGCTACAATTCGTTCAGCGAAA 788979 Query 14034 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14093 | | ||||| |||||| || ||||| | | ||||| | | || | Sbjct 788980 GTGGAGCTTTTGGAGCTTATCCAATTGAGGGCCCAATTCGCCTTTTTCGCTACACAAGGC 789039 Query 14094 ATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTA-GTACTTGAAATGTATGTATC 14152 || ||||| || || || || |||||||| || ||| || | | || || || || || Sbjct 789040 ATCGTTTCGATGGCGTTGAACAAATATTCTTTTTCTGTAGGGTCCTG-TATATAGGTTTC 789098 Query 14153 AATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14212 || || | ||||||||||||||||| ||||| ||||||||||| |||||||| ||||| Sbjct 789099 TATCAGAATACTATACATTTCAGAGTGAATGTTCTCCATAGCTATTTGAAAACCGTAAAA 789158 Query 14213 GCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTCGGCCAAATTTTCATTAA 14271 ||| | |||||| | || || ||| || | ||||| ||| | || |||||||| | Sbjct 789159 GCAGCGAGCTTCTGGTATCTGAACCTCCTGACT-GAATCTCTCGACTAAGTTTTCATTGA 789217 Query 14272 CTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT 14331 | ||||||||| ||| || ||||| || || | | ||| || | | || || | Sbjct 789218 CAATACCATCAGAAGCAGCGAAAAAGGCTAAAACATGCGAAATGAAATGTCTTTCGTCCT 789277 Query 14332 TGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAA 14391 | ||| || ||||| | | || ||| || || ||||| ||| |||||| | Sbjct 789278 TAGAGAGATTCTTCCATTGCTTCGAGTCTCGAGACAGGTCAACTTCCTCAGTTGTCCAGA 789337 Query 14392 AACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTA 14451 | ||| | |||| ||||||| || |||||| ||||| || |||||||| |||| Sbjct 789338 AGGAAGCTTCTGCTTCTTTATACTTTGTCCATATATCTTTGTACTGAATAGGAAATACTA 789397 Query 14452 CAAATC-TCGAAGATGTTTCTTTAAGAATTGGTTC 14485 |||| | || | ||| ||||| | || | ||||| Sbjct 789398 CAAACCGTCCAGGAT-TTTCTCTTAGGAGGGGTTC 789431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479581724936200