Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq160 284 1e-71 >seq160 Length=904994 Score = 284 bits (314), Expect = 1e-71 Identities = 539/786 (69%), Gaps = 8/786 (1%) Strand=Plus/Plus Query 13462 ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGAC 13521 |||| || |||||| ||||| | || |||||||||| | ||||||||||| | || Sbjct 788620 ACTTGATTACAACCAAGTTCCTTCAGCAACCTATCAGCAACATACTCAATATATGTACAC 788679 Query 13522 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTT 13581 ||| || ||||||||| || |||| | ||||| | | ||||| |||||||| | Sbjct 788680 ATTGCATTACAATTCATTCCGATTAAACTGACAGGCAGAGCTTCAGTTAGAAATTCTTGT 788739 Query 13582 TCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT 13641 || || ||||| || || ||| || | ||| || | || || | | Sbjct 788740 TCGATTTTAACAGCATCACAAATGATATTCGTGATACGTTCTTGCGACGGTTTCTGAACT 788799 Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 | ||| |||| | || ||||| |||||||| | || ||||| || ||| | | Sbjct 788800 AAATGAGAGAAAAGAAGGCAGGCAAAGTCACAATGCAAACCTTCATCCCTGGAAATCAAT 788859 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || ||||| || ||||| ||||||||||| || || || || ||||| ||||| || || Sbjct 788860 TCATTTGAGAAAGTTAAACCTGGCATCAAACCACGCTTCTTCAACCAGAATATAGCTGCA 788919 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 || || || || ||||| || ||||||||||| || |||| | |||||| | || Sbjct 788920 AAACTACCAGAGAAAAATATCCCTTCAACTGCAGCGAAAGCTACAATTCGTTCAGCGAAA 788979 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 13881 | | ||||| |||||| || ||||| | | ||||| | | || | Sbjct 788980 GTGGAGCTTTTGGAGCTTATCCAATTGAGGGCCCAATTCGCCTTTTTCGCTACACAAGGC 789039 Query 13882 ATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATC 13940 || |||||||| || ||||| |||| ||| || ||| ||| | || | | || || || Sbjct 789040 ATCGTTTCGATGGCGTTGAACAAATATTCTTTTTCTGTAGGGTCCTGTA-TATAGGTTTC 789098 Query 13941 AATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 || || | ||||||||||||||||| ||||| || |||||||| |||||||| ||||| Sbjct 789099 TATCAGAATACTATACATTTCAGAGTGAATGTTCTCCATAGCTATTTGAAAACCGTAAAA 789158 Query 14001 ACATCTAGCTTCTGACCATTGTACCTCC-GAGTAAAATCTTTCTGCCAAGTTTTCATTAA 14059 || | |||||||| || |||||| || | ||||| || | ||||||||||| | Sbjct 789159 GCAGCGAGCTTCTGGTATCTGAACCTCCTGACT-GAATCTCTCGACTAAGTTTTCATTGA 789217 Query 14060 CAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT 14119 ||||||||||| ||| || ||||| || || | | ||| || | | || || | Sbjct 789218 CAATACCATCAGAAGCAGCGAAAAAGGCTAAAACATGCGAAATGAAATGTCTTTCGTCCT 789277 Query 14120 TGTTGAGTTTTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCA 14177 | ||| || ||||| | ||| | || ||| || || ||||| ||| |||||| Sbjct 789278 TAGAGAGATTCTTCCATT--GCTTCGAGTCTCGAGACAGGTCAACTTCCTCAGTTGTCCA 789335 Query 14178 AAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14237 || ||| | |||| ||||||| || |||||| ||||| || |||||||| || Sbjct 789336 GAAGGAAGCTTCTGCTTCTTTATACTTTGTCCATATATCTTTGTACTGAATAGGAAATAC 789395 Query 14238 TACAAA 14243 |||||| Sbjct 789396 TACAAA 789401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478442872292520