Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq318 105 7e-18 seq253 98.7 1e-15 seq805 91.5 1e-13 >seq318 Length=663677 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| |||||||||||| || ||||| ||||| | Sbjct 605914 CCACCACGGAGACGGAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAGAC 605855 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| |||||||| ||||| |||||| | ||| || || || || Sbjct 605854 AAGGTTCTGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGA 605795 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||||| | || | ||||| | ||||| ||| Sbjct 605794 ATTCCTTCCTTGTCCTGAATTTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCCACT 605735 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || || | ||||| || || || |||||| Sbjct 605734 TCCAAGGTAATGGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCATA 605687 Score = 102 bits (112), Expect = 8e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| |||||||||||| || ||||| |||| || Sbjct 606142 CCACCACGGAGACGAAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAAT--CTG 606085 Query 143018 ATTGTGCTCG--AGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || | ||| ||||| |||||||| |||||| |||||| | ||| || || || | Sbjct 606084 ATAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGG 606025 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | ||||| |||||||| ||||| ||| | | || | ||||| | ||||| | Sbjct 606024 GAATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAA 605965 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | || | ||||| || || || ||||| || || || ||||| Sbjct 605964 CTTCTAACGTTATGGTCTTTCCAGTTAAAGTTTTGACAAAGATCTGCAT 605916 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | ||| | ||| ||||||| ||||||||||| || ||||| ||||| Sbjct 606371 GCCTCCTCTGAGACGAAGAACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCTGA 606312 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||||| |||||||| ||||| |||||| | ||| || || || || Sbjct 606311 CAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGG 606252 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| |||||||| ||||| ||| | | || | ||||| | ||||| || Sbjct 606251 AATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCGGATGGTTCAAC 606192 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | || | ||||| || || | ||||| || || || |||||| Sbjct 606191 TTCCAAGGTAATTGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCATA 606143 >seq253 Length=804807 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | || ||||| || | |||| |||||||| |||||||| ||||| || | Sbjct 281368 CCTCCCCTCAATCGCAATACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGAC 281427 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| | ||||||||||||| | || | ||| || ||||| || || Sbjct 281428 AAAGTACGTCCA-TCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGG 281486 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || |||| ||| || || | | ||| | || |||| ||||| || Sbjct 281487 AATTCCCTCCTTGTTTTGAATCTTAGCCTTAACATTTTCGATGGTATCCGAAGGTTCGAC 281546 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || ||||| ||||| || || || ||||| Sbjct 281547 CTCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCAT 281594 >seq805 Length=567825 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| ||||| || || | ||| |||||| | || ||||| ||| | | Sbjct 473816 CCACCACGGAGACGAAAAACCAAGTGGAGTGTGGATTCTCTCTGAATGTTATAAGCTGAC 473757 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| |||||||| ||||| |||||| | ||| || || || || Sbjct 473756 AAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGCGGA 473697 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| |||||||| ||||| ||| | | || | ||||| | ||||| ||| Sbjct 473696 ATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACT 473637 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || || | ||||| || |||||||||||| Sbjct 473636 TCTAACGTTATGGTCTTTCCAGTTGAAGTTTTGACAAATATTTGCATA 473589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506859804971760