Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq74 125 1e-23 seq160 105 1e-17 >seq74 Length=1577532 Score = 125 bits (138), Expect = 1e-23 Identities = 316/469 (67%), Gaps = 20/469 (4%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || | || || || | || | ||| | || || ||||| |||||| Sbjct 1095365 CAGGGAGGCAACAAGAGACCTGGGGCGTTTGCTATTTACCTAGAGCCGTGGCATGCGGAC 1095424 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 |||| || || |||| || || ||| | || || || |||||||| Sbjct 1095425 ATTTTGGAGTTCCTCGACCTGAAGAAGAACACCGGGAAAGATATTAATCGCGCCAGGGAA 1095484 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || | ||| | || || |||||||||||| | ||| | | | || ||| Sbjct 1095485 CTATTCTACGCTATGTGGATCCCTGACTTGTTCATGAAGAGGGTCGAGGCTGACGG-TAC 1095543 Query 97056 TGGAGC-CTAATGTGCCCCGACTCG-TCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGT 97113 | | | || |||||||| | ||| || || || ||||||||||||||||| |||| Sbjct 1095544 TTGGTCTCTGATGTGCCCGCA-TCGCTCCAAGGGGCTTTCCGATTGCTGGGGCGAGGAGT 1095602 Query 97114 TTGAG--GCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGT---CGA 97168 ||||| || | ||| ||||||| || ||| | ||| || | ||| || Sbjct 1095603 TTGAGAAGCTCTATGAACG--CTACGAGGCTGAAGGCAAGTTCGTCAGGC-AGTTACCG- 1095658 Query 97169 TGCACGAGAACTGTGGAAGGCCATCGTGACGG---CTCAGGTAGAGACTGGAACTCCGTA 97225 ||||| || ||||||| |||||| || | | |||||||||||||| ||||| || Sbjct 1095659 -GCACGTGACGTGTGGAAAGCCATC---ACTGTATCCCAGGTAGAGACTGGTACTCCATA 1095714 Query 97226 CATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAA 97285 ||| ||||||||||| | || | || || ||||| | | | ||||| ||||| Sbjct 1095715 CATGCTCTACAAGGACGCTTGCAACAGGAAAAGTAACCAGCAGAATCTTGGCACGATCAA 1095774 Query 97286 GGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 | || ||| |||||||||| ||| | ||||| |||| || || ||| Sbjct 1095775 GAGCAGCAACTTGTGCACGGAGATTATCGAGTATACCTCCCCCGATGAG 1095823 Score = 120 bits (132), Expect = 4e-22 Identities = 315/469 (67%), Gaps = 20/469 (4%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || | || || || | || | ||| | || || ||||| |||||| Sbjct 1092034 CAGGGAGGCAACAAGAGACCTGGGGCGTTTGCTATTTACCTAGAGCCGTGGCATGCGGAC 1092093 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 |||| || || |||| || || ||| | || || || |||||||| Sbjct 1092094 ATTTTGGAGTTCCTCGACCTGAAGAAGAACACCGGGAAAGATATTAATCGCGCCAGGGAA 1092153 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || | ||| | || || |||||||||||| | ||| | | | || ||| Sbjct 1092154 CTATTCTACGCTATGTGGATCCCTGACTTGTTCATGAAGAGGGTCGAGGCTGACGG-TAC 1092212 Query 97056 TGGAGC-CTAATGTGCCCCGACTCG-TCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGT 97113 | | | || |||||||| | ||| || || || ||| |||||||||||| |||| Sbjct 1092213 TTGGTCTCTGATGTGCCCGCA-TCGCTCCAAGGGGCTTTCCATTTGCTGGGGCGAGGAGT 1092271 Query 97114 TTGAG--GCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGT---CGA 97168 ||||| || | ||| ||||||| || ||| | ||| || | ||| || Sbjct 1092272 TTGAGAAGCTCTATGAACG--CTACGAGGCTGAAGGCAAGTTCGTCAGGC-AGTTACCG- 1092327 Query 97169 TGCACGAGAACTGTGGAAGGCCATCGTGACGG---CTCAGGTAGAGACTGGAACTCCGTA 97225 ||||| || ||||||| |||||| || | | |||||||||||||| ||||| || Sbjct 1092328 -GCACGTGACGTGTGGAAAGCCATC---ACTGTATCCCAGGTAGAGACTGGTACTCCTTA 1092383 Query 97226 CATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAA 97285 ||| |||||||||||| | || | || || ||||| | | | ||||| ||||| Sbjct 1092384 CATGCTCTACAAGGATGCTTGCAACAGGAAAAGTAACCAGCAGAATCTTGGCACGATCAA 1092443 Query 97286 GGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 | || ||| |||||||||| ||| | ||||| |||| || || ||| Sbjct 1092444 GAGCAGCAACTTGTGCACGGAGATTATCGAGTATACCTCCCCCGATGAG 1092492 >seq160 Length=904994 Score = 105 bits (116), Expect = 1e-17 Identities = 409/631 (65%), Gaps = 29/631 (5%) Strand=Plus/Minus Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT- 125188 || || ||||| |||| ||||| || || | || ||||| || ||||| || || | Sbjct 789263 TTCATTTCGCATGTTTTAGCCTTTTTCGCTGCTTCTGATGGTATTGTCAATGAAAACTTA 789204 Query 125189 GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCC 125247 || || | ||||| ||| ||| | || ||||| | ||| ||||||||||| || | Sbjct 789203 GTCGAGA-GATTCAGTCAGGAGGTTCAGATACCAGAAGC-TCGCTGCTTTTACGGTTTTC 789146 Query 125248 AAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC 125307 |||| || |||||| | ||||| |||||||| || ||||| || | || || | Sbjct 789145 AAATAGCTATGGAGAACATTCACTCTGAAATGTATAGTATTCTGATAGAAACCTATATAC 789086 Query 125308 GCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367 || || | ||| | | || ||||| ||||| ||| |||| | | || | Sbjct 789085 AGGACCCTACAGAAAAAGAATATTTGTTCAACGCCATCGAAACGATGCCTTGTGTAGCGA 789026 Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG-TCTTCGTACGCCGACAGA 125426 ||||||| | |||| | ||||| | | | ||| || | | ||| || || Sbjct 789025 AAAAGGCGAATTGGGCCCTCAATTGGATA-AGCTCCAAAAGCTCCACTTTCGCTGAACGA 788967 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 | || || ||||| || || || || || || || || ||||||||||| || || || Sbjct 788966 ATTGTAGCTTTCGCTGCAGTTGAAGGGATATTTTTCTCTGGTAGTTTTGCAGCTATATTC 788907 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||| | |||||||| || | ||||| || | || | || || || || || | Sbjct 788906 TGGTTGAAGAAGCGTGGTTTGATGCCAGGTTTAACTTTCTCAAATGAATTGATTTCCAGG 788847 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTA--TCTG----CG 125599 || || || | || |||||||||||| || || || || || || || | || Sbjct 788846 GATGAAGGTTTGCATTGTGACTTTGCCTGCCTTCTTTTCTCTCATTTAGTTCAGAAACCG 788787 Query 125600 TCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGAT 125659 || | || | ||| | ||| | |||| |||| ||||| || | || Sbjct 788786 TCGCAAGAACGTATC-----ACGAATA--TCAT-----TTGT----GATGCTGTTAAAAT 788743 Query 125660 AGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCT 125719 |||||||| |||||||| ||| | || || ||||| | || || ||||| || || Sbjct 788742 CGAACAAGAATTTCTAACTGAAGCTCTGCCTGTCAGTTTAATCGGAATGAATTGTAATGC 788683 Query 125720 AATGTGCGAGTACATAGAGTTTGTGGCAGAT 125750 |||||| || || |||| ||| || ||| Sbjct 788682 AATGTGTACATATATTGAGTATGTTGCTGAT 788652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740833241786680