Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq318 93.3 3e-14 >seq318 Length=663677 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||| || || ||||| || ||||| | || ||| || | || ||| Sbjct 605896 ACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAGACAAGGTTCTGCCATCTTCC 605837 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || ||||| || || | || | ||| || || || ||| | || || ||||| | Sbjct 605836 AGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGA 605777 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| |||||| | ||| || ||| || ||| ||| | ||||||||| || Sbjct 605776 ATTTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCCACTTCCAAGGTAATGGTCTTT 605717 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| |||||||||||| || ||||| Sbjct 605716 CCAGTTAGAGTTTTGACAAAGATCTGCAT 605688 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| || | |||||| || || ||||| || ||||| | || ||| | | || ||| Sbjct 606352 ACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCTGACAAGGTTCGGCCATCTTCC 606293 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || ||||| || || | || | ||| || || || ||| | |||||||||||| Sbjct 606292 AGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCTTGG 606233 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| ||| || | ||| || ||| || || ||| | |||||| || || Sbjct 606232 ATTTTAGCTTTCACGTTCTCGATGGTGTCGGATGGTTCAACTTCCAAGGTAATTGTCTTT 606173 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| |||||||||||| || ||||| Sbjct 606172 CCAGTTAGAGTTTTGACAAAGATCTGCAT 606144 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||| || || ||||| || ||||| | | ||| | | || ||| Sbjct 606124 ACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGATAAGGTTCGGCCATCTTCC 606065 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || ||||| || ||| | || | ||| || || || ||| | |||||||||||| Sbjct 606064 AGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCTTGG 606005 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| ||| || | ||| || || || || ||| | || ||||| || Sbjct 606004 ATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGTCTTT 605945 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || ||||||||||||||||| || |||||| Sbjct 605944 CCAGTTAAAGTTTTGACAAAGATCTGCATT 605915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414449551781842