Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq160 250 2e-61 >seq160 Length=904994 Score = 250 bits (276), Expect = 2e-61 Identities = 524/771 (68%), Gaps = 14/771 (2%) Strand=Plus/Plus Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTT-CATTAAATCACAGTTCATTCCTATTA 13037 ||| || ||||||||| |||| || || ||| |||| || ||| |||||||| |||| Sbjct 788646 CAACCTATCAGCAACATACTCAATATA-TGTACACATTGCATTACAATTCATTCCGATTA 788704 Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097 | | ||||||| |||||| |||| ||| | || ||| || | ||| || || || | Sbjct 788705 AACTGACAGGCAGAGCTTCAGTTAGAAATTCTTGTTCGATTTTAACAGCATCACAAATGA 788764 Query 13098 TGTCTCTTATTACGTTCTCTAATG-GAGGATTT--GA--TAGATGCTTAAACATCATACA 13152 | | || | |||||||| || || | ||| || || ||| || | | || Sbjct 788765 TAT-TCGTGATACGTTCT----TGCGACGGTTTCTGAACTAAATGAGAGAAAAGAAGGCA 788819 Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212 ||||| ||||| ||||| |||||||| || || | || ||||| || |||| ||| Sbjct 788820 GGCAAAGTCACAATGCAAACCTTCATCCCTGGAAATCAATTCATTTGAGAAAGTTAAACC 788879 Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272 ||||| | || || || || | ||| |||||||| ||||| ||| || |||||||| Sbjct 788880 TGGCATCAAACCACGCTTCTTCAACCAGAATATAGCTGCAAAACTACCAGAGAAAAATAT 788939 Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTAT 13332 ||||||||||| || || |||| | | |||| | | || |||| ||| Sbjct 788940 CCCTTCAACTGCAGCGAAAGCTACAATTCGTTCAGCGAAAGTGGAGCTTTTGGAGCTTAT 788999 Query 13333 CCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAA 13392 ||| || |||||| || || |||| || || ||| |||| || ||||| || Sbjct 789000 CCAATTGAGGGCCCAATTCGCCTTTTTCGCTACACAAGGCATCGTTTCGATGGCGTTGAA 789059 Query 13393 TAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTC 13452 ||||| | |||||| || ||| ||||| || ||||||| | ||||||||||| Sbjct 789060 CAAATATTCTTTTTCTGTAGGGTCCTGTATATAGGTTTCTATCAGAATACTATACATTTC 789119 Query 13453 TGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG 13512 || ||||| || ||||| |||||||| ||||| ||||| || | ||| |||| || ||| Sbjct 789120 AGAGTGAATGTTCTCCATAGCTATTTGAAAACCGTAAAAGCAGCGAGCTTCTGGTATCTG 789179 Query 13513 AA-CTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaa 13571 || || | || | ||||| || |||||||||| || || || || ||| |||||| | Sbjct 789180 AACCTCCTGACT-GAATCTCTCGACTAAGTTTTCATTGACAATACCATCAGAAGCAGCGA 789238 Query 13572 aaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTG 13631 |||| || | | ||| ||| || | | |||||| | || | || ||| | Sbjct 789239 AAAAGGCTAAAACATGCGAAATGAAATGTCTTTCGTCCTTAGAGAGATTCTTCCATTGCT 789298 Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691 | ||| || | || || |||||| ||||| || ||||| | || | |||| Sbjct 789299 TCGAGTCTCGAGACAGGTCAACTTCCTCAGTTGTCCAGAAGGAAGCTTCTGCTTCTTTAT 789358 Query 13692 ACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTATCTTCCAG 13742 || | |||||||||| || || ||| ||||| || || | | ||||| Sbjct 789359 ACTTTGTCCATATATCTTTGTACTGAATAGGAAATACTACAAACCGTCCAG 789409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430854273376986