Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq160 264 3e-65 seq318 178 3e-39 seq253 165 2e-35 seq792 149 1e-30 seq199 129 1e-24 seq805 118 2e-21 seq12025 114 3e-20 >seq160 Length=904994 Score = 264 bits (292), Expect = 3e-65 Identities = 525/769 (68%), Gaps = 20/769 (3%) Strand=Plus/Minus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 ||||| ||||||| || ||| | |||||||||| | ||| ||| | || | ||| Sbjct 789401 TTTGTAGTATTTCCTATTCAGTACAAAGATATATGGACAAAGTATAAAGAAGCAGAAGCT 789342 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822 || || ||||| || ||||| || |||||| |||| | | ||||| ||| | Sbjct 789341 TCCTTCTGGACAACTGAGGAAGTTGACCTGTCTCGAGACTCGAAGCAATGGAAGAATCTC 789282 Query 268823 AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGT 268882 || |||||| || || || || || | || ||||| || | | ||||||| Sbjct 789281 TCTAAGGACGAAAGACATTTCATTTCGCATGTTTTAGCCTTTTTCGCTGCTTCTGATGGT 789222 Query 268883 ATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGA 268942 || || || ||||| |||| |||| ||| |||| ||||| ||||| || ||||| | Sbjct 789221 ATTGTCAATGAAAACTTAGTCGAGAGATTCAGTCAGGAGGTTCAGATACCAGAAGCTCGC 789162 Query 268943 TGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTA 269002 || |||||||| || || |||||||| || || ||||| || || ||||| ||| | | Sbjct 789161 TGCTTTTACGGTTTTCAAATAGCTATGGAGAACATTCACTCTGAAATGTATAGTATTCTG 789102 Query 269003 ATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT----CTATGAG 269058 ||||| || |||||| | || | ||||| ||| ||||| | | || Sbjct 789101 ATAGAAACCTATATACAGGACCCTACAGAAAA----AGAATATTTGTTCAACGCCATCGA 789046 Query 269059 AACTATGGACTGTGTGAGaaaaaaaTCTGAAT-GGGCTCTGAAATGGATAAACG---ATA 269114 ||| ||| ||||| || ||||| |||| |||| || || ||||||| | | | Sbjct 789045 AACGATGCCTTGTGT-AGCGAAAAAGGCGAATTGGGCCCTCAATTGGATAAGCTCCAAAA 788987 Query 269115 GCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGG 269174 || | ||| || ||| | | || ||||| || || || ||||| ||||| || || | Sbjct 788986 GCTCCACTTTCGCTGAACGAATTGTAGCTTTCGCTGCAGTTGAAGGGATATTTTTCTCTG 788927 Query 269175 GGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCT 269234 | |||||| ||||| || ||||||||||| | || | |||||||| |||||||||| Sbjct 788926 GTAGTTTTGCAGCTATATTCTGGTTGAAGAAGCGTGGTTTGATGCCAGGTTTAACTTTCT 788867 Query 269235 CTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTA 269294 | || |||||||| |||||| |||||||| || || ||||| || || | | || Sbjct 788866 CAAATGAATTGATTTCCAGGGATGAAGGTTTGCATTGTGACTTTGCCTGCCTTCTTTTCT 788807 Query 269295 CTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTAT-ACGAA-ATTATAGATTCAGC 269352 || ||| || || ||||| || |||| | |||| ||||| || || | || Sbjct 788806 CTCATTTAGTT---CAGAAACCGTCGCAAG--AACGTATCACGAATATCATTTGTGATGC 788752 Query 269353 TGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAA 269412 |||| | ||| |||||||||||| |||||||| || || | | ||||| ||||| Sbjct 788751 TGTTAAAATCGAACAAGAATTTCTAACTGAAGCTCTGCCTGTCAGTTTAATCGGAATGAA 788692 Query 269413 TAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTG 269461 | | || | ||| ||||||| ||| || ||||||| |||||| Sbjct 788691 TTGTAATGCAATGTGTACATATATTGAGTATGTTGCTGATAGGTTGCTG 788643 >seq318 Length=663677 Score = 178 bits (196), Expect = 3e-39 Identities = 158/198 (80%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 |||||||||||||||||| ||||| ||||| | ||||| || ||||| ||||||||||| Sbjct 605885 TGTAGATTCTTTCTGAATGTTATAATCAGACAAGGTTCTGCCATCTTCCAGTTGTTTTCC 605826 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||| || || | || ||||| || || || |||||||| || |||||||| || ||||| Sbjct 605825 AGCGAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGAATTTTGGCTTT 605766 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 |||||| || | ||| ||| ||||| || || | ||||| ||||| ||||| || || Sbjct 605765 TACATTCTCGATGGTGTCGGATGGTTCCACTTCCAAGGTAATGGTCTTTCCAGTTAGAGT 605706 Query 104542 TTTTACAAATATCTGCAT 104559 ||| ||||| |||||||| Sbjct 605705 TTTGACAAAGATCTGCAT 605688 Score = 167 bits (184), Expect = 5e-36 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| |||||||| ||||| ||||| || || | |||| || ||||| ||||||||||| Sbjct 605657 TGTGGATTCTTTTTGAATGTTATAATCTGACAAGGTTCGGCCATCTTCCAGTTGTTTTCC 605598 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 |||||| || | || ||||| || || || |||||||| ||||| || ||||| ||||| Sbjct 605597 AGCAAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTATCTTGGATCTTGGCTTT 605538 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || ||||| ||||| || || ||||| |||||||| || || Sbjct 605537 AACATTCTCGATGGTGTCAGATGGTTCAACCTCAAGGGTGATAGTTTTACCAGTCAGCGT 605478 Query 104542 TTTTACAAATATCTGCATTTTG 104563 ||| ||||| ||||||||| || Sbjct 605477 TTTCACAAAGATCTGCATTCTG 605456 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || | ||| || | ||| | ||||||||||||||||| ||||| || || Sbjct 606370 CCTCCTCTGAGACGAAGAACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCTGAC 606311 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||| || ||||| |||||||||||||| || || | || ||||| || || || Sbjct 606310 AAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGA 606251 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || ||||| || || || || ||||| || || || | ||| ||| ||||| || Sbjct 606250 ATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCGGATGGTTCAACT 606191 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | ||||| ||||| ||||| || ||||| ||||| |||||||| Sbjct 606190 TCCAAGGTAATTGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 606144 Score = 147 bits (162), Expect = 5e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 |||||||||||||||||| ||||| || |||| |||| || ||||| ||||||||||| Sbjct 606113 TGTAGATTCTTTCTGAATGTTATAATCTGATAAGGTTCGGCCATCTTCCAGTTGTTTTCC 606054 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 |||||| || | || ||||| || || || || || ||||| || || || || ||||| Sbjct 606053 AGCAAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCTTGGATTTTAGCTTT 605994 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || ||||| || |||| || || ||||| ||||| | || Sbjct 605993 CACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGTCTTTCCAGTTAAAGT 605934 Query 104542 TTTTACAAATATCTGCATT 104560 ||| ||||| ||||||||| Sbjct 605933 TTTGACAAAGATCTGCATT 605915 >seq253 Length=804807 Score = 165 bits (182), Expect = 2e-35 Identities = 165/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| || || | |||||||| || || ||||| ||||| || | ||| | || ||||| Sbjct 281385 TACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGACAAAGTACGTCCATCTTC 281444 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | |||||| ||||||||||||| | ||||||||| || || ||||| || || | || Sbjct 281445 CAATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATTCCCTCCTTGTTTTG 281504 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 |||||| || || |||||||| | |||||| |||||| ||||| || || || ||||| Sbjct 281505 AATCTTAGCCTTAACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTT 281564 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||||| | ||||| ||||| |||||||| ||| Sbjct 281565 ACCAGTCAAAGTTTTAACAAAGATCTGCATCTTG 281598 >seq792 Length=424820 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || || ||||| | || || || ||||||||||| ||||| || ||||||| ||| Sbjct 97140 CTGAGGACGAGATGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGAAAGAGTTCGACCA 97081 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| || ||||||||||| || || | || || ||||| || || || ||||| || Sbjct 97080 TCTTCGAGCTGTTTTCCAGCGAAGATCAATCTTTGCTGATCTGGGGGGATCCCTTCCTTG 97021 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 || || ||||| || || || ||||| | ||| || ||||| ||||| || || || Sbjct 97020 TCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCAGAGGGTTCGACCTCGAGGGTGATG 96961 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || |||||||| || || || ||||| Sbjct 96960 GTCTTACCCGTGAGTGTTTTAACGAAAATTTGCAT 96926 >seq199 Length=980398 Score = 129 bits (142), Expect = 1e-24 Identities = 161/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| || || | || ||||| || || ||||| ||||| || | ||| | || ||||| Sbjct 850393 TACAAGGTGAAGAGTGGATTCCTTTTGTATATTGTAGTCCGACAAAGTACGTCCATCTTC 850334 Query 104410 TAGTTGTTTTCCAGCAAAAAT--------TAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 | |||||| ||||||||||| || | |||||| || || || ||||| || Sbjct 850333 CAATTGTTTACCAGCAAAAATGCAAAAATTAAACACTGTTGGTCTGGTGGAATTCCCTCC 850274 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || || |||||||| || || |||||||| | | |||| || | | ||||| || || Sbjct 850273 TTGTCTTGAATCTTAGCCTTAACATTTTCGATGATATCCGAAGATCCGACCTCAAGAGTG 850214 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||||||||| | ||||| ||||| |||||||| ||| Sbjct 850213 ATGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCATCTTG 850172 >seq805 Length=567825 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| |||||| ||||||| ||||| | || | |||| || ||||| ||||||||||| Sbjct 473787 TGTGGATTCTCTCTGAATGTTATAAGCTGACAAGGTTCGGCCATCTTCCAGTTGTTTTCC 473728 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||| || || | || ||||| || || || || || ||||| || || || || ||||| Sbjct 473727 AGCGAAGATCAATCTTTGTTGGTCTGGCGGAATGCCCTCTTTGTCTTGGATTTTAGCTTT 473668 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || ||||| || |||| || || ||||| ||||| || Sbjct 473667 CACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGTCTTTCCAGTTGAAGT 473608 Query 104542 TTTTACAAATATCTGCAT 104559 ||| |||||||| ||||| Sbjct 473607 TTTGACAAATATTTGCAT 473590 >seq12025 Length=7061 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||||| | ||||||||| || || |||| || || || |||||||| || || Sbjct 4363 GCAAAAATTAAACGCTGTTGATCTGGTGGAATTCTCTCCTTGTCTTGAATCTTAGCCTTA 4304 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||||| | |||| ||||| || || || ||||||||||| | ||| Sbjct 4303 ACATTTTCGATGGTATCCGAAAGTTCGACCTCAAGAGTGATGGTCTTACCAGTCAAAGTT 4244 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||| ||| Sbjct 4243 TTAACAAAGATCTGCATCTTG 4223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151038547341244