Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq643 174 2e-38 seq148 150 2e-31 >seq643 Length=490110 Score = 174 bits (192), Expect = 2e-38 Identities = 357/518 (69%), Gaps = 22/518 (4%) Strand=Plus/Minus Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 || || || | |||||||| || || ||| ||| | ||||||||| || || | |||| Sbjct 176994 TGTGCTATCATATATGTTAGCAAAGCGTAACTAGCAATATTAAAAGGCACTCCAAGTCCC 176935 Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAAA--AT-ATTGTCTATAGCATAAAAT 7014 |||||||| |||| ||||||| |||||| || | || ||| ||| | | ||| | Sbjct 176934 ATATCTGCAGATCGTTGATAAAGTTGACATGAAAGTTCATCATTTCCTACA--AAAAACT 176877 Query 7015 TGACACAATACATGACATGGAGGTAAAACAGCCTGATCT---ATATCAGATGGATTCCAA 7071 ||| || | ||| || |||||||| ||| ||| |||||| || ||||| Sbjct 176876 GGACCAAACA-ATGGCAAGGAGGTAAT---GCCATTTCTGGGATATCAATAGGGTTCCAT 176821 Query 7072 GCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTG- 7130 ||| ||||| || ||||||||||| || ||||||||| | || | |||| || Sbjct 176820 GCACACATTATGATGCGTCTATCATTAGGTCTTGTTTTTA---TAGTATTTATTACATGA 176764 Query 7131 --TAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCA 7188 ||| || || || || | | || ||| | | ||| | | | || | ||||||| Sbjct 176763 GCTAACTGGTCAATTCCTTTATTTTTATAGTCTGCATGCATACCTTTGTACTCAGCTCCA 176704 Query 7189 AAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAAT 7248 ||||||||||||||||| ||||| || |||||||||||||||||||| | || || | Sbjct 176703 AAATGTCTCCATTGAAAACCATATATCGGACCTAAATCACCTTCTTCTCTATCTTTTAGG 176644 Query 7249 CCTAATCGA-TTTAAATTAGATTTTGATCCATAAGCATCCCAAATATGTACAGAtttttt 7307 || || || | ||| | ||| | || || ||||||||||| || |||| | Sbjct 176643 CC-AACGGAGTCTAAGAACTGTCTTGTACTATTTGCGTCCCAAATATGAAC-TTTTTTAT 176586 Query 7308 tGATAAATTTAAA-GAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTC 7366 | | | || ||| | ||| ||| |||| ||| ||||| | || ||||| || | | Sbjct 176585 CGCTTAGTTCAAAGGCATTCGTACTTCCTCTAATAAACCAGAGTAGCTCTTCGACAACGC 176526 Query 7367 CACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAAT 7404 | | |||||| | ||||| || || |||||||| ||| Sbjct 176525 CTCTCCAAAATACCCTTTTCGTTGTTAATAAAGGAAAT 176488 >seq148 Length=1013487 Score = 150 bits (166), Expect = 2e-31 Identities = 230/322 (71%), Gaps = 8/322 (2%) Strand=Plus/Plus Query 164395 TGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGA-GAATTTTCTCTTATTTTCAG 164453 ||| |||| || ||||||| |||||||||| || | | || ||| | || ||||| Sbjct 488496 TGGGATTTCCAAAAAATGGGTATAGGTGGACT-GAGCAATGAGTTTAATGCAATATTCAG 488554 Query 164454 ACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACA 164513 ||||||||||||||| ||| | ||| ||||| | || |||| || || || || Sbjct 488555 ACGAGCATTTGCTTCAAGAGTGTTCCCTCCAGAAATTGTCGAACAATTGGGATGCAAGCA 488614 Query 164514 TATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATG 164573 | | ||||| |||||||| |||| || |||||| |||||||| || ||||| ||| Sbjct 488615 TGTGAAAGGTATTTTATTGTATGGCCCACCTGGTACAGGTAAAACTTTGATGGCACGACA 488674 Query 164574 CATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATT 164630 || | | || | || || ||| || || |||||| || ||||||||| | |||| Sbjct 488675 GATCGGT-AATATGTTGAATGCTCGTGAACC--TAAAATCGTGAATGGTCCTCAGATATT 488731 Query 164631 GAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGA 164690 | | || ||||| || || |||||||| ||||| || | ||||||| || || ||||| Sbjct 488732 GGATAAGTATGTTGGCGAATCAGAAGCAAATGTCAGGAGGTTGTTTGCCGATGCCGAAGA 488791 Query 164691 AGAACAAAAGAAAGCAGGTTTA 164712 |||| | || || |||| || Sbjct 488792 AGAAGAGAAACGAGTAGGTATA 488813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595690311178800