Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq57 125 4e-24 seq1340 123 1e-23 seq1294 122 5e-23 seq328 122 5e-23 seq590 120 2e-22 seq242 120 2e-22 seq2302 118 6e-22 seq278 116 2e-21 seq31 111 8e-20 seq3633 95.1 6e-15 >seq57 Length=4625438 Score = 125 bits (138), Expect = 4e-24 Identities = 82/91 (90%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || |||||||| ||| |||||||||| |||||||||| ||||||||||||||||||| Sbjct 2599061 TTCATAAAAAAAAAAACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 2599120 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 2599121 ACGACGCTCTAACCAACTGAGCTAATGGGCC 2599151 Score = 89.7 bits (98), Expect = 3e-13 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2598794 CGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 2598844 >seq1340 Length=327597 Score = 123 bits (136), Expect = 1e-23 Identities = 81/89 (91%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| |||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 146104 AAGAAAAAA--AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 146047 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 146046 GACGCTCTAACCAACTGAGCTAATGGGCC 146018 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 160373 AAAAAAACAA--TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 160316 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 160315 GCTCTAACCAACTGAGCTAATGGGCC 160290 >seq1294 Length=295364 Score = 122 bits (134), Expect = 5e-23 Identities = 89/104 (86%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||||| || ||||||||| |||||||||| |||||||||||||||||||| Sbjct 171849 TAATAAAAAAAAAAGCTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 171908 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATTGTGA 11543 ||||||||| ||||||||||||||||||||| || ||| ||| Sbjct 171909 CGACGCTCTAACCAACTGAGCTAATGGGCCGCTTACCATTTTGA 171952 >seq328 Length=661709 Score = 122 bits (134), Expect = 5e-23 Identities = 82/92 (89%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||| ||||||| || |||||||||| |||||||||| |||||||||||||||||| Sbjct 430618 ATTATTAAAAAA---AAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAG 430562 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||||||||||||||||||| Sbjct 430561 CACGACGCTCTAACCAACTGAGCTAATGGGCC 430530 >seq590 Length=562023 Score = 120 bits (132), Expect = 2e-22 Identities = 84/95 (88%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAA-ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 |||| | ||||| | ||| |||||||||| |||||||||| |||||||||||||||| Sbjct 196326 AATTCAGAAAAATAAAAAAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATT 196385 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||||||||||||||||||| Sbjct 196386 AGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 196420 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 184966 AAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 185025 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 185026 CAACTGAGCTAATGGGCC 185043 Score = 113 bits (124), Expect = 2e-20 Identities = 81/93 (87%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| |||||| ||| ||||||||| |||||||||| ||||||||||||||||| Sbjct 188164 AATTTATAAAAGGA-AAAGTGGCCCATGGGGGGATCGAACCAGCGACCTTCGCGTTATTA 188222 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 188223 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 188255 >seq242 Length=734329 Score = 120 bits (132), Expect = 2e-22 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 484585 AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 484644 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 484645 CAACTGAGCTAATGGGCC 484662 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | |||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 468475 AAAAAA--AGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 468418 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 468417 GCTCTAACCAACTGAGCTAATGGGCC 468392 >seq2302 Length=267198 Score = 118 bits (130), Expect = 6e-22 Identities = 79/88 (90%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| |||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 2811 ATAAAAAAG---ATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 2755 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 2754 ACGCTCTAACCAACTGAGCTAATGGGCC 2727 >seq278 Length=1775425 Score = 116 bits (128), Expect = 2e-21 Identities = 76/83 (92%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| | Sbjct 1461918 AAATATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAA 1461977 Query 11511 CCAACTGAGCTAATGGGCCGTCG 11533 |||||||||||||||||||| || Sbjct 1461978 CCAACTGAGCTAATGGGCCGACG 1462000 >seq31 Length=2099244 Score = 111 bits (122), Expect = 8e-20 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || ||||| || ||||||||| |||||||||| |||||||||||||||||||||| Sbjct 1739302 ATGAAAAAAAAAGATGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 1739243 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 1739242 ACGCTCTAACCAACTGAGCTAATGGGCC 1739215 >seq3633 Length=34717 Score = 95.1 bits (104), Expect = 6e-15 Identities = 69/80 (86%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC--GACGCTCTR 11509 ||| | ||||||| |||||||||| ||||||||||||||||||||| ||||||| Sbjct 12640 AAAGTAGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAGACGCTCCA 12699 Query 11510 ACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| Sbjct 12700 ACCAACTGAGCTAATGGGCC 12719 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261413461362868