Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq318 145 7e-30 seq253 125 6e-24 seq792 120 3e-22 seq12025 84.2 2e-11 >seq318 Length=663677 Score = 145 bits (160), Expect = 7e-30 Identities = 160/211 (76%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | |||||||| || || | ||||||||| | ||| ||| | ||| | Sbjct 606124 ACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATC--TGATAAGGTTCGGCCATCTT 606067 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 |||| |||||||| ||||||| |||||||| || ||||| ||||| || |||||||| | Sbjct 606066 CCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCTT 606007 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||||| || || ||| ||| ||||||| | || || || | ||| ||||| | Sbjct 606006 GGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGTCT 605947 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| | |||||| |||||||||||||| Sbjct 605946 TTCCAGTTAAAGTTTTGACAAAGATCTGCAT 605916 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | |||||||| || || | ||||||||| || || || ||| ||| Sbjct 605896 ACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAGACAAGGTTCTGCCATCTTCC 605837 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || |||||||| | ||||| |||||||| || ||||| ||||| ||||| ||||| | | Sbjct 605836 AGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGA 605777 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| || || || ||| ||||| | | || || || | || ||||| ||| Sbjct 605776 ATTTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCCACTTCCAAGGTAATGGTCTTT 605717 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| |||||||| |||||||||||||| Sbjct 605716 CCAGTTAGAGTTTTGACAAAGATCTGCAT 605688 Score = 136 bits (150), Expect = 4e-27 Identities = 164/222 (74%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || ||||| ||||| | ||||||||| || || | ||| ||| Sbjct 605668 ACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTGACAAGGTTCGGCCATCTTCC 605609 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || |||||||| ||||||| |||||||| || ||||| ||||| ||||| || || | Sbjct 605608 AGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTATCTTGG 605549 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || || || ||| ||||||| | || || |||| ||||| ||||| Sbjct 605548 ATCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCAACCTCAAGGGTGATAGTTTTA 605489 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAACATAT 95020 ||||| || |||||||||||||||||||| || | |||| || Sbjct 605488 CCAGTCAGCGTTTTCACAAAGATCTGCATTCTGA-AACAAAT 605448 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | || | ||||| || | |||||||| || || | ||||||||| | Sbjct 606370 CCTCCTCTGAGACGAAGAACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCTGAC 606311 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| ||||| |||||||| | ||||| |||||||| || ||||| ||| Sbjct 606310 AAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGA 606251 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | ||||| || || ||| ||| ||||| | | || || Sbjct 606250 ATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCGGATGGTTCAACT 606191 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || |||||||| |||||||| |||||||||||||| Sbjct 606190 TCCAAGGTAATTGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 606144 >seq253 Length=804807 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| ||||||||||| || | ||| | ||||||||||||||| | || || || | Sbjct 281368 CCTCCCCTCAATCGCAATACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGAC 281427 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||| ||||| || |||| ||||| | || |||||||| ||| Sbjct 281428 AAAGTACGTCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 281487 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || |||| | ||| || ||||| || ||| || || | | ||||| Sbjct 281488 ATTCCCTCCTTGTTTTGAATCTTAGCCTTAACATTTTCGATGGTATCCGAAGGTTCGACC 281547 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || ||||| | |||||| |||||||||||||| Sbjct 281548 TCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCAT 281594 >seq792 Length=424820 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| ||||||| | || | || | || || ||||| || | || || ||| Sbjct 97152 CCTCCCCTCAATCTGAGGACGAGATGGAGGGTGGACTCCTTCTGAATATTGTAGTCGG-- 97095 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || ||| || ||| || ||||||||||| | ||||| ||||||||||||||||| | Sbjct 97094 AAAGAGTTCGACCATCTTCGAGCTGTTTTCCAGCGAAGATCAATCTTTGCTGATCTGGGG 97035 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| | || || ||||||||| ||| ||||||| | | |||| Sbjct 97034 GGATCCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCAGAGGGTTCGA 96975 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | |||||||| || || || || ||||| || || || ||||| Sbjct 96974 CCTCGAGGGTGATGGTCTTACCCGTGAGTGTTTTAACGAAAATTTGCAT 96926 >seq12025 Length=7061 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| ||||| | || |||||||| ||||| | || ||||| | ||| || ||||| | Sbjct 4362 CAAAAATTAAACGCTGTTGATCTGGTGGAATTCTCTCCTTGTCTTGAATCTTAGCCTTAA 4303 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | ||| || || | | ||||| |||| |||||||| || ||||| | ||||| Sbjct 4302 CATTTTCGATGGTATCCGAAAGTTCGACCTCAAGAGTGATGGTCTTACCAGTCAAAGTTT 4243 Query 94992 TCACAAAGATCTGCAT 95007 | |||||||||||||| Sbjct 4242 TAACAAAGATCTGCAT 4227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448154510409480