Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_006633.1 Length=27346 Score E Sequences producing significant alignments: (Bits) Value seq109 145 1e-30 seq1125 123 4e-24 seq521 118 2e-22 seq760 100 5e-17 seq16090 95.1 2e-15 seq2 95.1 2e-15 seq207 93.3 7e-15 seq17628 89.7 9e-14 seq43 82.4 1e-11 >seq109 Length=1123850 Score = 145 bits (160), Expect = 1e-30 Identities = 141/180 (78%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 25285 ttAAGGTAGTACTACCGGTATTAGAATTGACTTTCAGAATTTAATGAAATTTGGCATATT 25344 |||||||||||||| |||| |||||||| | | ||||||||||||||| |||||||||| Sbjct 928809 TTAAGGTAGTACTATCGGTTTTAGAATTAGCGTGCAGAATTTAATGAAACTTGGCATATT 928750 Query 25345 GGTACTTTATAATATCATAATTAAGCAGTAAAATTTTTGAAAGCCAACCAAGTCTTGaaa 25404 ||||| | || |||| |||||||| |||| || ||||| ||||| || || || || Sbjct 928749 GGTACATAATTATATTATAATTAACCAGTTAAGTTTTTAGAAGCCTACAGAGAACTGGAA 928690 Query 25405 aaaaGATATTAATATCTACATATTTTTGCTTTTAACATTGACCTTTATGGATAATCATAG 25464 ||||| ||| ||||| || ||| || | |||||| || | | |||||| ||||| || Sbjct 928689 AAAAG-TATAAATATTTAAATAAAATTACCTTTAACGTTAATCCTTATGGGAAATCACAG 928631 >seq1125 Length=196804 Score = 123 bits (136), Expect = 4e-24 Identities = 137/180 (76%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 25285 ttAAGGTAGTACTACCGGTATTAGAATTGACTTTCAGAATTTAATGAAATTTGGCATATT 25344 ||||||||||| || |||| |||||||| | | ||||||||||| ||||||||||||| Sbjct 86674 TTAAGGTAGTATTATCGGTTTTAGAATTAGCGTGCAGAATTTAATAGAATTTGGCATATT 86733 Query 25345 GGTACTTTATAATATCATAATTAAGCAGTAAAATTTTTGAAAGCCAACCAAGTCTTGaaa 25404 ||||| | || ||||||| ||| | |||| || ||||| |||| || || || || Sbjct 86734 GGTACATAATTATATCATGATTGATCAGT-AAGTTTTTAGAAGCTTACAGAGAACTGGAA 86792 Query 25405 aaaaGATATTAATATCTACATATTTTTGCTTTTAACATTGACCTTTATGGATAATCATAG 25464 |||| |||| ||||| || | | | | ||||||||||| | |||||| ||||| || Sbjct 86793 AAAATATATAAATAT-TAAAAAAAAATACCTTTAACATTGATCCTTATGGGAAATCACAG 86851 >seq521 Length=448032 Score = 118 bits (130), Expect = 2e-22 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 25302 GTATTAGAATTGACTTTCAGAATTTAATGAAATTTGGCATATTGGTACTTTATAATATCA 25361 || |||||||| | | ||||||| || |||| |||||||||||||| | || |||||| Sbjct 19574 GTTTTAGAATTAGCGTGCAGAATTCAAAGAAACCTGGCATATTGGTACATAATTATATCA 19515 Query 25362 TAATTAAGCAGTAAAATTTTTGAAAGCCAACCAAGTCTTGaaaaaaaGATATTAATATCT 25421 ||||||| |||| || ||||| ||||| || || ||| | ||||||||||||||| | Sbjct 19514 TAATTAACCAGTTAAGTTTTTAGAAGCCTACAGAGAATTGGAGAAAAGATATTAATATTT 19455 Query 25422 ACATATTTTTGCTTTTAACATTGACCTTTATGGATAATCATAG 25464 | | | | | || ||| |||| | ||||||| ||||| || Sbjct 19454 AAAAAAAAATACCTTCAACGTTGAGCCTTATGGAAAATCACAG 19412 >seq760 Length=356692 Score = 100 bits (110), Expect = 5e-17 Identities = 121/160 (76%), Gaps = 11/160 (7%) Strand=Plus/Plus Query 12666 AATACTTTTAAGTCCTTCGCGCCATTGTCTACCCAGaaaaaaaaGACACTGCGCATGTCT 12725 |||||||| || | | ||||| |||| | |||||||| || | ||||||||| || Sbjct 262345 AATACTTTCAAATATTCCGCGCTATTGCTCAGCCAGAAAAGAAGGT-ACTGCGCATAGCT 262403 Query 12726 TGTTTGTAAATAACGAACCTT--ATTTACATAGAAATAGATATACAAACGATAGGTGGAT 12783 || |||||| ||||| ||||||||||| ||||||||| ||| ||| |||||| Sbjct 262404 AGT----AAATAA---ACCTTTTATTTACATAGATATAGATATAGAAATCATACGTGGAT 262456 Query 12784 TTTAGTTTATTGCTAATTATAATTAAACTACATTGAATTA 12823 |||||||| || || ||||| | |||| ||||| ||||| Sbjct 262457 TTTAGTTT-TTTTTATTTATAGTCAAACCACATTCAATTA 262495 Score = 95.1 bits (104), Expect = 2e-15 Identities = 115/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 9651 AATACTTTTAAGTCTTTCGCGCCATTGTCTACCAAGAAAAGAAAGATACTGCGTATGTGT 9710 |||||||| || | || ||||| |||| | | ||||||||| | ||||||| || | Sbjct 262345 AATACTTTCAAATATTCCGCGCTATTGCTCAGCCAGAAAAGAAGG-TACTGCGCATAGCT 262403 Query 9711 TGTAAACGAAC--TTTATTTACATAGATATAAATACGCAAACGATAAGTAGATTTTACTT 9768 ||||| ||| |||||||||||||||||| ||| ||| ||| || ||||||| || Sbjct 262404 AGTAAATAAACCTTTTATTTACATAGATATAGATATAGAAATCATACGTGGATTTTAGTT 262463 Query 9769 TATTGCTAATTATAATTAAACTACATTGAATTA 9801 | || || ||||| | |||| ||||| ||||| Sbjct 262464 T-TTTTTATTTATAGTCAAACCACATTCAATTA 262495 >seq16090 Length=10911 Score = 95.1 bits (104), Expect = 2e-15 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 25285 ttAAGGTAGTACTACCGGTATTAGAATTGACTTTCAGAATTTAATGAAATTTGGCATATT 25344 |||||||| ||||| |||| | |||||| | | ||||||| ||||||| | |||||||| Sbjct 10855 TTAAGGTAATACTATCGGTTTCAGAATTAGCGTGCAGAATTCAATGAAACTGGGCATATT 10796 Query 25345 GGTACTTTATAATATCATAATTAAGCAGTAAA 25376 ||||| | || ||||||||||||| |||| || Sbjct 10795 GGTACATAATTATATCATAATTAACCAGTTAA 10764 >seq2 Length=6831003 Score = 95.1 bits (104), Expect = 2e-15 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 25290 GTAGTACTACCGGTATTAGAATTGACTTTCAGAATTTAATGAAATTTGGCATATTGGTAC 25349 ||||||||| ||| |||| || | |||| |||||||||||| ||| | ||||||||| Sbjct 4029712 GTAGTACTAAAGGTTTTAGGATCAGCGTTCAAAATTTAATGAAAATTGCCTTATTGGTAC 4029771 Query 25350 TTTATAATATCATAATTAAGCAGTAAAATTTTTGAAAGCCAACCAAGTCTTGaaaaaaaG 25409 |||| ||| || || || |||| |||||| | | | || | |||||||||| Sbjct 4029772 ATTATTATAAGATTATGAATCAGTTGAATTTTGAGAGGTCTACAGGGAACTGAAAAAAAG 4029831 Query 25410 ATATTAATATCTACATATTTTTGCTTTTAACATTGACCTTTATGG 25454 |||||||||| | | || ||| |||| | ||| || |||||| Sbjct 4029832 ATATTAATATAAAAAAATGTTTACTTTCACCATCGATTCTTATGG 4029876 >seq207 Length=804162 Score = 93.3 bits (102), Expect = 7e-15 Identities = 139/197 (71%), Gaps = 19/197 (10%) Strand=Plus/Minus Query 25285 ttAAGGTAGTACTACCGGTATTAGAATTGACTTTCAGAATTTAAT------GAAATT--- 25335 ||||||||| |||| |||| |||||||| | | ||||||||||| | ||| Sbjct 479333 TTAAGGTAGAACTATCGGTTTTAGAATTAGCGTGCAGAATTTAATACGTGGCATATTGTG 479274 Query 25336 --------TGGCATATTGGTACTTTATAATATCATAATTAAGCAGTAAAATTTTTGAAAG 25387 |||||||||||||| | || ||||||||||||| |||| || |||| ||| Sbjct 479273 GCATATTGTGGCATATTGGTACATAATTATATCATAATTAACCAGTCAAGTTTTAAGAAG 479214 Query 25388 CCAACCAAGTCTTGaaaaaaaGATATTAATATCTACATATTTTTGCTTTTAACATTGACC 25447 || || || || ||||||||||| ||||| || | | || | || |||||||| | Sbjct 479213 CCTACTGAGAACTGGAAAAAAGATATAAATAT-TA-AAAAAATTACCTTCAACATTGATC 479156 Query 25448 TTTATGGATAATCATAG 25464 |||| | ||||| || Sbjct 479155 CTTATTGGAAATCACAG 479139 >seq17628 Length=4177 Score = 89.7 bits (98), Expect = 9e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 25285 ttAAGGTAGTACTACCGGTATTAGAATTGACTTTCAGAATTTAATGAAATTTGGCATATT 25344 |||||||||||||| |||| |||||||| | | |||||||||||| ||||||||||||| Sbjct 74 TTAAGGTAGTACTATCGGTTTTAGAATTAGCGTGCAGAATTTAATGGAATTTGGCATATT 15 Query 25345 GGTACTTTATAATA 25358 ||||| | || ||| Sbjct 14 GGTACATAATTATA 1 >seq43 Length=1342857 Score = 82.4 bits (90), Expect = 1e-11 Identities = 120/168 (71%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 25297 TACCGGTATTAGAATTGACTTTCAGAATTTAATGAAATTTGGCATATTGGTACTTTATAA 25356 || |||| |||| || | | ||||||||||||||| | ||||| ||||||| | || | Sbjct 670718 TATCGGTTCTAGAGTTAGCGTGCAGAATTTAATGAAACTGGGCATTTTGGTACATAATTA 670659 Query 25357 TATCATAATTAAGCAGTAAAATTTTTGAAAGCCAACCAAGTCTTGaaaaaaaGATATTAA 25416 ||||||||||| | || || || || |||| || || || |||||||||| || Sbjct 670658 TATCATAATTACCCGGTTAAGTTGTTAGAAGCTTACAGAGAACTGGAAAAAAGATACAAA 670599 Query 25417 TATCTACATATTTTTGCTTTTAACATTGACCTTTATGGATAATCATAG 25464 ||| || | | | ||||| ||||| | |||||| ||||| || Sbjct 670598 TAT-TAAAAA---AAACCTTTAAAATTGATCCTTATGGGAAATCACAG 670555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 87364152507831