Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq10249 136 4e-28 seq969 127 2e-25 seq497 113 5e-21 >seq10249 Length=23757 Score = 136 bits (150), Expect = 4e-28 Identities = 100/114 (88%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 35 AACCGTTTTTCTAATTTTTAACTTCCCGCTAA--AAATCTGAGATTTTC-AAAAATCGGG 91 ||| |||||| || |||||||||||||||||| ||||| |||||||| |||||||||| Sbjct 22795 AACAGTTTTTTTATTTTTTAACTTCCCGCTAAGAAAATCAAAGATTTTCGAAAAATCGGG 22854 Query 92 AAGTTATTGTTCTCACCCCATTTTACAAAAATCGAGTTTTCATCAGATCTCGAC 145 ||||||||| | ||||||| |||||||||||| ||||||||| |||||||||| Sbjct 22855 AAGTTATTGGTTTCACCCCGTTTTACAAAAATAAAGTTTTCATTAGATCTCGAC 22908 >seq969 Length=257037 Score = 127 bits (140), Expect = 2e-25 Identities = 98/114 (86%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 39 GTTTTTCTAATTTTTAACTTCCCGCTAA--AAATCTGAGATTTTC-AAAAATCGGGAAGT 95 |||||| || |||||||||||||||||| ||||| |||||||| |||||||||||||| Sbjct 126094 GTTTTTTTATTTTTTAACTTCCCGCTAAGAAAATCAAAGATTTTCGAAAAATCGGGAAGT 126035 Query 96 TATTGTTCTCACCCCATTTTACAAAAATCGAGTTTTCATCAGATCTCGACGTTT 149 ||||| | | ||||| ||||||||| ||| |||||| || ||||||||| |||| Sbjct 126034 TATTGGTTTTACCCCGTTTTACAAATATCAAGTTTTTATTAGATCTCGATGTTT 125981 >seq497 Length=562632 Score = 113 bits (124), Expect = 5e-21 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 15751 GTTGATCCATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATAGTGTTCTATGAAACT 15810 |||||| |||||||||||||| || ||||||||||| |||||| ||||| ||| |||| Sbjct 171193 GTTGATTCATTCAAAAGTTATAGCAGTTTGAAAATTGAAAAAATTGTGTTTTATCGAACT 171134 Query 15811 TTTATCAGACTTTTGAGCTGGGAGAGCTCAAA 15842 ||||||||||||||||||| | ||||||||| Sbjct 171133 TTTATCAGACTTTTGAGCTCGAGGAGCTCAAA 171102 Score = 100 bits (110), Expect = 3e-17 Identities = 81/96 (84%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 1468 TCGGTTCATTTATTCAAAAGTTATTGCCGTTTGAAAATTCAAAAAATTGTGTCTTTA--- 1524 || ||| ||| ||||||||||||| || ||||||||||| |||||||||||| |||| Sbjct 171196 TCTGTTGATTCATTCAAAAGTTATAGCAGTTTGAAAATTGAAAAAATTGTGT-TTTATCG 171138 Query 1525 AACTGCTATTAGAGTTTTGAGCTCGAAGAGCTCAAA 1560 |||| ||| ||| |||||||||||| ||||||||| Sbjct 171137 AACTTTTATCAGACTTTTGAGCTCGAGGAGCTCAAA 171102 Score = 82.4 bits (90), Expect = 8e-12 Identities = 66/77 (86%), Gaps = 6/77 (8%) Strand=Plus/Plus Query 1312 AATCGGTTGATGCGTTCGTGAGATATCGTTGTCGaaaa-aaatcgaaaaaaGTGtttttt 1370 ||||||||||| ||||| || ||||||| |||||| |||||||||||||| ||||| Sbjct 171229 AATCGGTTGATTCGTTC----GAGATCGTTGACGAAAATAAATCGAAAAAAGT-ATTTTT 171283 Query 1371 tGTAATAACTTCGAAAT 1387 |||||||||| |||||| Sbjct 171284 TGTAATAACTCCGAAAT 171300 Score = 78.8 bits (86), Expect = 9e-11 Identities = 99/133 (74%), Gaps = 6/133 (5%) Strand=Plus/Plus Query 15553 CATCAAAAAACCA-CGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 || || ||||| | | ||| | ||| || | | |||||||||||||||||||||||| Sbjct 171190 CAACAGAAAACAAACATCGGTCGCCTCCGGTCCGCTCAAAATCGGTTGATTCGTTCGAG- 171248 Query 15612 GATATCGTGAACGAAAGAAAACCGAAAAAATTGTTTTTTCGGGATTACTCCGAAATTTTC 15671 ||||| |||||| ||| |||||||| | |||||| | || |||||||||| ||| Sbjct 171249 ---ATCGTTGACGAAAATAAATCGAAAAAAGTATTTTTT-GTAATAACTCCGAAATGTTC 171304 Query 15672 GGTTCGATCAATT 15684 || | || ||| Sbjct 171305 CATTAGTTCGATT 171317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50936029742198