Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_006651.1 Length=19161 Score E Sequences producing significant alignments: (Bits) Value seq1025 123 3e-24 seq526 82.4 9e-12 >seq1025 Length=248832 Score = 123 bits (136), Expect = 3e-24 Identities = 124/157 (79%), Gaps = 12/157 (8%) Strand=Plus/Minus Query 3462 AAATAGTATATTACACTACAAGGGCAGAAAG-TTGAGATTCCTGCACTGCGCGCCATGTG 3520 ||||| |||||||||||||||||||||| || |||| ||||||||||||| || || Sbjct 181796 AAATAATATATTACACTACAAGGGCAGACAGCTTGAAATTCCTGCACTGCACGTCA---- 181741 Query 3521 CCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAA-ATTTCTGCCCA 3579 |||||||| |||| ||||| |||||| || | |||||||||| |||| |||||| | Sbjct 181740 CCCGAGGCAAAGCTGAGGGAATCATG--ACACCGTTCAGGGCTGTCAAGCTTTCTGTTCG 181683 Query 3580 TGTAGTG----TATACTATTTTTCTTGCTATGCGGTC 3612 ||| ||| ||||||||| ||||| || ||||| Sbjct 181682 TGTGGTGTAGCTATACTATTATTCTTTATAACCGGTC 181646 Score = 116 bits (128), Expect = 5e-22 Identities = 115/146 (79%), Gaps = 11/146 (8%) Strand=Plus/Minus Query 4352 AAATAGTATATTACACTACAAGGGCAGAAAGTTTGAGATTCCTGCACTGCGTGCCATATG 4411 ||||| |||||||||||||||||||||| || |||| ||||||||||||| | || Sbjct 181796 AAATAATATATTACACTACAAGGGCAGACAGCTTGAAATTCCTGCACTGCACGTCA---- 181741 Query 4412 CCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAA-ATTTCTGCCCA 4470 |||||||| |||| ||||| |||||| || | |||||||||| |||| |||||| | Sbjct 181740 CCCGAGGCAAAGCTGAGGGAATCATG--ACACCGTTCAGGGCTGTCAAGCTTTCTGTTCG 181683 Query 4471 TGTAGTG----TATACTAGTTTTCTT 4492 ||| ||| ||||||| | ||||| Sbjct 181682 TGTGGTGTAGCTATACTATTATTCTT 181657 >seq526 Length=595835 Score = 82.4 bits (90), Expect = 9e-12 Identities = 105/141 (74%), Gaps = 9/141 (6%) Strand=Plus/Plus Query 3469 ATATTACACTACAAGGGCAGAAAGTT-GAGATTCCTGCA------CTGCGCGCCATG-TG 3520 |||| || ||||| |||||||||| | || ||| ||| ||| ||| ||| || Sbjct 376251 ATATCACGCTACAGGGGCAGAAAGCTCGAAATTTCTGATGCGTTTCTGAGCGTTATGATG 376310 Query 3521 CCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAA-ATTTCTGCCCA 3579 ||||| |||||||||| |||||| | || ||||||||||| |||| | ||| | || Sbjct 376311 CCCGAATTGAAGCCGAGGACATCATAACGCGTAGTTCAGGGCTTTCAAGCTCTCTTCTCA 376370 Query 3580 TGTAGTGTATACTATTTTTCT 3600 ||| ||||| |||||||||| Sbjct 376371 GGTACTGTATTCTATTTTTCT 376391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 61179539805916