Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_006653.1 Length=26062 Score E Sequences producing significant alignments: (Bits) Value seq1025 120 5e-23 seq526 82.4 1e-11 >seq1025 Length=248832 Score = 120 bits (132), Expect = 5e-23 Identities = 122/155 (79%), Gaps = 12/155 (8%) Strand=Plus/Plus Query 20685 GACCGCATAGCAAGAAAAATAGTATA----CACTACATGGGCAGAAAT-TTGAGAGCCCT 20739 ||||| || ||||| ||||||||| ||| ||| | |||||| |||| |||||| Sbjct 181646 GACCGGTTATAAAGAATAATAGTATAGCTACACCACACGAACAGAAAGCTTGACAGCCCT 181705 Query 20740 GAACTGCGTGCCATGATGCCCTCGGCTTCGCCTCGGGCACATGGCGCGCAGTGCAGGAAT 20799 |||| | || |||||| ||||| |||| |||||||| || || ||||||||||||| Sbjct 181706 GAACGGTGT--CATGATTCCCTCAGCTTTGCCTCGGG----TGACGTGCAGTGCAGGAAT 181759 Query 20800 CTCAA-CTTTCTGCCCTTGTAGTGTAATATACTAT 20833 |||| || |||||||||||||||||||||| ||| Sbjct 181760 TTCAAGCTGTCTGCCCTTGTAGTGTAATATATTAT 181794 Score = 118 bits (130), Expect = 2e-22 Identities = 122/157 (78%), Gaps = 11/157 (7%) Strand=Plus/Plus Query 5321 GACCGCATAGTAAGAAAACTAGTATA----CACTACATGGGCAGAAAT-TTGAGAGCCCT 5375 ||||| || ||||| | ||||||| ||| ||| | |||||| |||| |||||| Sbjct 181646 GACCGGTTATAAAGAATAATAGTATAGCTACACCACACGAACAGAAAGCTTGACAGCCCT 181705 Query 5376 GAACTGCGTGCCATGATGCCCTCGGCTTCGCCTCGGGCATATGGCGCGCAGTGCAGGAAT 5435 |||| | || |||||| ||||| |||| |||||||| || || ||||||||||||| Sbjct 181706 GAACGGTGT--CATGATTCCCTCAGCTTTGCCTCGGG----TGACGTGCAGTGCAGGAAT 181759 Query 5436 CTCAGACTTTCTGCCCTTGTAGTGTAATATACTATTT 5472 ||| || |||||||||||||||||||||| ||||| Sbjct 181760 TTCAAGCTGTCTGCCCTTGTAGTGTAATATATTATTT 181796 Score = 84.2 bits (92), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 4/77 (5%) Strand=Plus/Minus Query 18651 AAATAGTATATTACACTACAAGGGCAGAAAGTTTGAGATTCCTGCACTGCGCGCCATATG 18710 ||||| |||||||||||||||||||||| || |||| ||||||||||||| || || Sbjct 181796 AAATAATATATTACACTACAAGGGCAGACAGCTTGAAATTCCTGCACTGCACGTCA---- 181741 Query 18711 CCCGAGGCGAAGCCGAG 18727 |||||||| |||| ||| Sbjct 181740 CCCGAGGCAAAGCTGAG 181724 >seq526 Length=595835 Score = 82.4 bits (90), Expect = 1e-11 Identities = 105/141 (74%), Gaps = 9/141 (6%) Strand=Plus/Minus Query 20697 AGAAAAATAGTATACACTACATGGGCAGAAAT-TTGAGAGCCCTGAACTGCGTGCCATGA 20755 |||||||||| ||||| ||| || | ||| | |||| ||||||||||| || | |||| Sbjct 376391 AGAAAAATAGAATACAGTACCTGAGAAGAGAGCTTGAAAGCCCTGAACTACGCGTTATGA 376332 Query 20756 TGCCCTCGGCTTCGCCTCGGGCA-CATGGCGCGCAG------TGCAGGAATCTC-AACTT 20807 || |||||||||| ||||||| ||| ||| ||| ||| ||| || | ||| Sbjct 376331 TGTCCTCGGCTTCAATTCGGGCATCATAACGCTCAGAAACGCATCAGAAATTTCGAGCTT 376272 Query 20808 TCTGCCCTTGTAGTGTAATAT 20828 ||||||| ||||| || |||| Sbjct 376271 TCTGCCCCTGTAGCGTGATAT 376251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83256511370475