Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq5223 190 3e-44 seq760 156 5e-34 seq533 118 1e-22 seq558 95.1 2e-15 seq661 89.7 7e-14 seq14 86.0 8e-13 >seq5223 Length=27256 Score = 190 bits (210), Expect = 3e-44 Identities = 247/339 (73%), Gaps = 17/339 (5%) Strand=Plus/Minus Query 15349 CTAATTATAAATAAACTACATTGAATTAGACCATGATCTTTGAAAGGACTTTATTTTAAA 15408 ||||||||| |||||||||| | ||||||| ||||||| ||||||| | ||||| | Sbjct 1344 CTAATTATAGTCAAACTACATTCATTTAGACCGTGATCTTCCAAAGGACATACTTTTAGA 1285 Query 15409 TCATACTGAAGCGTATaaaaa---aaaTGGACTTGATCAGTTAAGTTTTTCGGCAGTTAT 15465 | |||| ||||||| |||||| ||||| | | ||| |||| |||||||| | |||||| Sbjct 1284 TAATACCGAAGCGT-TAAAAACAGAAATGAATTCGATTAGTTGAGTTTTTCTGGAGTTAT 1226 Query 15466 CGTGACCACGCCGGTTTTCATACATACAT--TTAAAAGCCAAACGTCCACGGAATAACTT 15523 ||||||||||| | ||| ||||||||||| | | | || || | || || Sbjct 1225 CGTGACCACGCTGTTTTCCATACATACATACATCACTTTTATACATCACTTGTAT---TT 1169 Query 15524 TTTTAAATNNNNNNNNCATTTATTTAAAAATCAAAATGTCATAAGTGTTGAAAATAGAAT 15583 |||||| |||| ||||| |||||||||| |||||||||| ||| | Sbjct 1168 ATTTAAA---ACGCAAAATTTGTTTAA-----AAAATGTCATGAGTGTTGAAACTAGTGT 1117 Query 15584 TTTTCCATGACATTTATGTGTAAACACAGTTCTACAAGTGTGATAGAAAATAAATAGAGA 15643 |||| | ||||| ||||||||||| || ||| |||| |||||| |||||| || Sbjct 1116 TTTTTCTTGACAATTATGTGTAAATGTTATTTTACGAGTGCCATAGAACTTAAATACTGA 1057 Query 15644 AAATTTTAGTCCAAGAAATCGCCTGATTTTTGTAAGGCG 15682 | ||| ||| ||| ||||| | ||||||||||||| || Sbjct 1056 CACTTTGAGTTCAAAAAATCACTTGATTTTTGTAAGACG 1018 >seq760 Length=356692 Score = 156 bits (172), Expect = 5e-34 Identities = 195/265 (74%), Gaps = 9/265 (3%) Strand=Plus/Plus Query 15305 ATAGATATAGATATACAAACGATTAGTGGATTTTTAGTTTATTGCTAATTATAAATAAAC 15364 ||||||||||||||| ||| || ||||||||| ||||| || || ||||| |||| Sbjct 262426 ATAGATATAGATATAGAAATCATACGTGGATTTT-AGTTTTTTT-TATTTATAGTCAAAC 262483 Query 15365 TACATTGAATTAGACCATGATCTTTGAAAGGACTTTATTTTAAATCATACTGAAGCGTAT 15424 ||||| ||||| ||| ||||||| |||||||| | || ||| || | || ||| ||| Sbjct 262484 CACATTCAATTATACCGTGATCTTCGAAAGGACATAATATTAGATAACACCGAAACGTTA 262543 Query 15425 aaaa--aaaaTGGACTTGATCAGTTAAGTTTTTCGGCAGTTATCGTGACCACGCCGGTTT 15482 |||| |||||| | | ||| ||||||||||||||| || |||| ||| || | ||||| Sbjct 262544 AAAACAAAAATGAATTCGATTAGTTAAGTTTTTCGGGAGCTATCATGATCATGTTGGTTT 262603 Query 15483 TCATACATACATTTA-AAAGCCAA----ACGTCCACGGAATAACTTTTTTAAATNNNNNN 15537 ||||||||||| | | | ||| ||| |||| |||||| | ||||||| Sbjct 262604 CCATACATACATACATACATACAAACGGACGGCCACAGAATAATTCTTTTAAACATCATT 262663 Query 15538 NNCATTTATTTAAAAATCAAAATGT 15562 ||||||| |||| |||| ||| Sbjct 262664 TTTATTTATTCAAAACGCAAATTGT 262688 >seq533 Length=433755 Score = 118 bits (130), Expect = 1e-22 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 14829 ACTTTTGAACCATATGTATTTTCTGACTCAGCTCGTCGAGTTAAGTCGGAATATAGCAAA 14888 ||||||||||||||||||||| |||| |||||||| ||| | |||| | ||||| |||| Sbjct 98582 ACTTTTGAACCATATGTATTTGCTGATTCAGCTCGACGAACTGAGTCAGGATATAACAAA 98641 Query 14889 ATTTTTCAAAAGTTTCGTCATGAGGACCATTGCAATAGTTAGATTTCTATGAAAT 14943 |||| | ||||| ||||||||||| | | ||| | ||||||||||||||||| Sbjct 98642 GTTTTACGGAAGTTGCGTCATGAGGAGAAATACAACAATTAGATTTCTATGAAAT 98696 >seq558 Length=446213 Score = 95.1 bits (104), Expect = 2e-15 Identities = 100/128 (78%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 14829 ACTTTTGAACCATATGTATTTTCTGACTCAGCTCGTCGAGTTAAGTCGGAATATA--GCA 14886 |||||||||||||||||||||||| | |||||||| | | | |||| ||||||| || Sbjct 55145 ACTTTTGAACCATATGTATTTTCTAATTCAGCTCGACAAACTGAGTCAGAATATAACACA 55086 Query 14887 AAATTTTTCAAAAGTTTCGTCATGAGGACCAT-TGCAATAGTTAGATTTCTATGAAATCT 14945 | ||||||| || ||| |||||| | | | || | ||| | ||||||||| | ||| || Sbjct 55085 ACATTTTTCGAATGTTGCGTCATAATG-CAATATACAAAAATTAGATTTCAACGAAGACT 55027 Query 14946 ACTAAAAA 14953 ||||| || Sbjct 55026 ACTAAGAA 55019 >seq661 Length=415087 Score = 89.7 bits (98), Expect = 7e-14 Identities = 112/155 (72%), Gaps = 13/155 (8%) Strand=Plus/Minus Query 15541 ATTTATTTAA------AAAT-------CAAAATGTCATAAGTGTTGAAAATAGAATTTTT 15587 |||||||||| |||| | |||||||| |||||||||| ||| ||||| Sbjct 341354 ATTTATTTAAAACGCGAAATGTGTTTAAATAATGTCATGAGTGTTGAAACTAGTGTTTTT 341295 Query 15588 CCATGACATTTATGTGTAAACACAGTTCTACAAGTGTGATAGAAAATAAATAGAGAAAAT 15647 | |||||| |||||||||| |||||| |||| ||||||| ||||||| || | | Sbjct 341294 TCTTGACATATATGTGTAAATGTTATTCTACGAGTGCGATAGAACATAAATACTGACACT 341235 Query 15648 TTTAGTCCAAGAAATCGCCTGATTTTTGTAAGGCG 15682 || ||| || ||||| | || ||||||| | ||| Sbjct 341234 TTGAGTTAAAAAAATCACTTGTTTTTTGTCAAGCG 341200 >seq14 Length=1887353 Score = 86.0 bits (94), Expect = 8e-13 Identities = 91/118 (77%), Gaps = 9/118 (8%) Strand=Plus/Plus Query 14831 TTTTGAACCATATGTATTTTCTGACTCAGCTCGTCGAGTTAAGTCGGAATATAGCAAAAT 14890 |||||||||||||||||||||||| |||||||| | | | |||| ||| |||| | Sbjct 1852934 TTTTGAACCATATGTATTTTCTGATTCAGCTCGACAAACTGAGTCTGAA-----CAAATT 1852988 Query 14891 TTTT--CAAAAGTTTCGTCATGAGGACCATTGCAATAGTTAGATTTCTATGAAATCTA 14946 |||| ||||| ||||||||||| | | ||| | ||||||||| ||||||| || Sbjct 1852989 TTTTTGCAAAA--AGCGTCATGAGGAAAAATACAAAAATTAGATTTCCATGAAATGTA 1853044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63287745031397