Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_006660.1 Length=20197 Score E Sequences producing significant alignments: (Bits) Value seq1469 109 7e-20 seq497 104 3e-18 seq175 100 4e-17 seq17 80.6 3e-11 >seq1469 Length=164036 Score = 109 bits (120), Expect = 7e-20 Identities = 141/191 (74%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 9501 GaaaaaaaaTTAGAAAAACGGTTCACCCTAAAGGCCATCCGTGCAACTTCCCGCTAATTC 9560 ||| | ||||| ||| |||| || |||||||| ||||||| || |||||||||||||||| Sbjct 82239 GAAGAGAAATT-GAAGAACG-TTGACCCTAAAAGCCATCCTTGTAACTTCCCGCTAATTC 82182 Query 9561 TATTCCTGGGCGCTAAAAATTGTACTTATGACATTTTTGAGATTTTTAAGCAC-AAAATA 9619 ||| | | ||||| |||||| ||| || | ||| || | || |||| | |||||| Sbjct 82181 TATGCTTTCGCGCTCAAAATTCCACTCGATACGTCTTTTAGCTCTTCAAGCTCAAAAATA 82122 Query 9620 TAATTTATGTGATATTTTGAGCTCGCTCAGTTCAATGAAATAATATTTTAATGCATTTGA 9679 || ||| || ||||| ||||| | || |||| || |||| || || | ||||| Sbjct 82121 TAGGATATTTGTTATTTCCAGCTCTCCGAGCTCAAGGAGATAACTGTTCTATACTTTTGA 82062 Query 9680 GCTCTCCCAGC 9690 ||||| | ||| Sbjct 82061 GCTCTTCGAGC 82051 >seq497 Length=562632 Score = 104 bits (114), Expect = 3e-18 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 9675 TTTGAGCTCTCCCAGCTCAAAAGTGTGATAGAAGTTTCATAGAACACTATTTTTGGAATT 9734 ||||||||| | ||||||||||| ||||| ||||| ||| ||||| |||||| |||| Sbjct 171102 TTTGAGCTCCTCGAGCTCAAAAGTCTGATAAAAGTTCGATAAAACACAATTTTTTCAATT 171161 Query 9735 TTCAAACCGCAATAACTTTTGAATGGATCAAC 9766 ||||||| || |||||||||||||| |||||| Sbjct 171162 TTCAAACTGCTATAACTTTTGAATGAATCAAC 171193 >seq175 Length=1055981 Score = 100 bits (110), Expect = 4e-17 Identities = 88/108 (81%), Gaps = 4/108 (4%) Strand=Plus/Plus Query 9502 aaaaaaaaTTAGAAAAACGGTTCACCCTAAAGGCCATCCGTGCAACTTCCCGCTAATTCT 9561 |||||||||| ||||| ||||| |||||||||||||||| || ||||||||||||||||| Sbjct 338937 AAAAAAAATTGGAAAA-CGGTTGACCCTAAAGGCCATCCCTGTAACTTCCCGCTAATTCT 338995 Query 9562 ATTCCTGGGCGCTAAAAATTGTACT---TATGACATTTTTGAGATTTT 9606 || | | ||||| |||||| ||| || || ||| |||| |||| Sbjct 338996 ATGCTTTTGCGCTCAAAATTCCACTCGATACAACGTTTCTGAGCTTTT 339043 >seq17 Length=1898645 Score = 80.6 bits (88), Expect = 3e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 16813 AGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAAAAGTGGT 16872 ||||||||||| ||| ||||||| |||| ||| ||||||||| || ||||||||||| Sbjct 1299334 AGGGTAGAAAACAATGAAAAACTTTTGGCCAGATCGAAAGGGGTCGGGTTCAAAAGTGGT 1299393 Query 16873 CGATTTGGCGTG 16884 ||||||||| || Sbjct 1299394 CGATTTGGCATG 1299405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 64493804773440