Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_006661.1 Length=11186 Score E Sequences producing significant alignments: (Bits) Value seq649 95.1 9e-16 seq57 93.3 3e-15 seq11963 87.8 1e-13 seq2664 82.4 5e-12 seq1389 78.8 7e-11 >seq649 Length=884455 Score = 95.1 bits (104), Expect = 9e-16 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 4324 TCAAATTGACCTACAGTTGGAATTGACCCCTTTTGATATGGATAAATTTTGTTCAGAAAT 4383 |||||| || | | |||||||||||||||||| || |||||||| ||| |||||| | Sbjct 147295 TCAAATAGATCAATGGTTGGAATTGACCCCTTTCAATTTGGATAAAAATTGGTCAGAAGT 147354 Query 4384 TTTCTTTTATCATATAACGAATTTCTGCCA 4413 |||| |||||||||||| ||| |||||||| Sbjct 147355 TTTCATTTATCATATAAAGAAGTTCTGCCA 147384 Score = 95.1 bits (104), Expect = 9e-16 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 5051 CAGAAGTTCATTATATGATAAAAGAAAATTTCTGACCAAAATTTATCCATATCAAAAGGG 5110 ||||| ||| |||||||||||| ||||| |||||||||| |||||||| || |||||| Sbjct 147381 CAGAACTTCTTTATATGATAAATGAAAACTTCTGACCAATTTTTATCCAAATTGAAAGGG 147322 Query 5111 GTCAATTCCAACTGTAGGTCAATTTGA 5137 |||||||||||| | | || |||||| Sbjct 147321 GTCAATTCCAACCATTGATCTATTTGA 147295 >seq57 Length=4625438 Score = 93.3 bits (102), Expect = 3e-15 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5051 CAGAAGTTCATTATATGATAAAAGAAAATTTCTGACCAAAATTTATCCATATCAAAAGGG 5110 ||||| || ||||||||| || ||||| |||| ||||| ||||| || |||||||||| Sbjct 353779 CAGAACTTTTTTATATGATGAATGAAAACTTCTTACCAATTTTTATTCAAATCAAAAGGG 353720 Query 5111 GTCAATTCCAACTGTAGGTCAATTTGACATGGAA 5144 ||| ||||||| | |||| ||||||||||||| Sbjct 353719 GTCGTTTCCAACCATTGGTCTATTTGACATGGAA 353686 Score = 91.5 bits (100), Expect = 1e-14 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 4317 TTCCATGTCAAATTGACCTACAGTTGGAATTGACCCCTTTTGATATGGATAAATTTTGTT 4376 ||||||||||||| |||| | ||||||| ||||||||||||| || ||||| ||| | Sbjct 353686 TTCCATGTCAAATAGACCAATGGTTGGAAACGACCCCTTTTGATTTGAATAAAAATTGGT 353745 Query 4377 CAGAAATTTTCTTTTATCATATAACGAATTTCTGC 4411 |||| ||||| || ||||||||| || |||||| Sbjct 353746 AAGAAGTTTTCATTCATCATATAAAAAAGTTCTGC 353780 >seq11963 Length=6748 Score = 87.8 bits (96), Expect = 1e-13 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 5051 CAGAAGTTCATTATATGATAAAAGAAAATTTCTGACCAAAATTTATCCATATCAAAAGGG 5110 ||||| ||| |||||| ||||| ||||| |||| ||||| || ||||| ||| |||||| Sbjct 6375 CAGAACTTCTTTATATAATAAATGAAAACTTCTAACCAAGTTTCATCCAAATCGAAAGGG 6434 Query 5111 GTCAATTCCAACTGTAGGTCAATTTGACATGGAATGAC 5148 || ||||||| | |||| | |||||||||||| || Sbjct 6435 GTTGATTCCAATCATTGGTCTACTTGACATGGAATTAC 6472 Score = 82.4 bits (90), Expect = 5e-12 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 4316 ATTCCATGTCAAATTGACCTACAGTTGGAATTGACCCCTTTTGATATGGATAAATTTTGT 4375 |||||||||||| | |||| | ||||||| |||||||| ||| ||||| || ||| Sbjct 6469 ATTCCATGTCAAGTAGACCAATGATTGGAATCAACCCCTTTCGATTTGGATGAAACTTGG 6410 Query 4376 TCAGAAATTTTCTTTTATCATATAACGAATTTCTG 4410 | |||| ||||| ||||| |||||| ||| ||||| Sbjct 6409 TTAGAAGTTTTCATTTATTATATAAAGAAGTTCTG 6375 >seq2664 Length=38797 Score = 82.4 bits (90), Expect = 5e-12 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 5057 TTCATTATATGATAAAAGAAAATTTCTGACCAAAATTTATCCATATCAAAAGGGGTCAAT 5116 ||| |||||||||||| ||||| ||||| |||| |||| ||| ||| ||||||||| || Sbjct 20214 TTCTTTATATGATAAATGAAAACTTCTGTCCAATTTTTAACCAAATCGAAAGGGGTCGAT 20273 Query 5117 TCCAACTGTAGGTCAATTTGACA 5139 |||||| | | || |||||||| Sbjct 20274 TCCAACCATTGTTCTATTTGACA 20296 Score = 78.8 bits (86), Expect = 7e-11 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 4322 TGTCAAATTGACCTACAGTTGGAATTGACCCCTTTTGATATGGATAAATTTTGTTCAGAA 4381 |||||||| || | | |||||||| ||||||||| ||| ||| |||| ||| ||||| Sbjct 20296 TGTCAAATAGAACAATGGTTGGAATCGACCCCTTTCGATTTGGTTAAAAATTGGACAGAA 20237 Query 4382 ATTTTCTTTTATCATATAACGAA 4404 ||||| |||||||||||| ||| Sbjct 20236 GTTTTCATTTATCATATAAAGAA 20214 >seq1389 Length=242283 Score = 78.8 bits (86), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 4328 ATTGACCTACAGTTGGAATTGACCCCTTTTGATATGGATAAATTTTGTTCAGAAATTTTC 4387 |||| |||| ||||||| || |||||| ||| ||||| || ||| |||||| ||||| Sbjct 222682 ATTGGCCTATGATTGGAATCGATCCCTTT-GATTTGGATGAAAATTGGTCAGAAGTTTTC 222624 Query 4388 TTTTATCATATAACGAATTTCTGCCAGAGG 4417 |||||||||||| || |||||||| ||| Sbjct 222623 ATTTATCATATAAAAAAGTTCTGCCAAAGG 222594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35670208649800