Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq160 194 2e-44 seq1059 104 2e-17 >seq160 Length=904994 Score = 194 bits (214), Expect = 2e-44 Identities = 515/788 (65%), Gaps = 12/788 (2%) Strand=Plus/Plus Query 21280 TTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACAT 21339 || ||||||||| ||||| | || ||||| || ||| | || |||||| |||||| Sbjct 788622 TTGATTACAACCAAGTTCCTTCAGCAACCTATCAGCAACATACTCAATATATGTACACAT 788681 Query 21340 TAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTC 21399 | | ||||||||| ||||| || | ||||| ||||||| || | ||| || ||| Sbjct 788682 TGCATTACAATTCATTCCGATTAAACTGACAGGCAGAGCTTCAGTTAGAAATTCTTGTTC 788741 Query 21400 TATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGG--GGATAC--- 21454 || || || ||| ||| ||||| | || | || || | | || | | Sbjct 788742 GATTTTAACAGCATCACAAATGATATTCGTGATAC-----GTTCTTGCGACGGTTTCTGA 788796 Query 21455 AATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATT 21514 | ||| || || | | || ||||| ||||||||||||||||||||||| || Sbjct 788797 ACTAAATGAGAGAAAAGAAGGCAGGCAAAGTCACAATGCAAACCTTCATCCCTGGAAATC 788856 Query 21515 AATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGAC 21574 |||||||| || || |||||||| ||||| || || | ||| || ||||| ||||| | Sbjct 788857 AATTCATTTGAGAAAGTTAAACCTGGCATCAAACCACGCTTCTTCAACCAGAATATAGCT 788916 Query 21575 GCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCG 21634 ||||| || || || || || || ||||| ||||| || || || | ||||||| || Sbjct 788917 GCAAAACTACCAGAGAAAAATATCCCTTCAACTGCAGCGAAAGCTACAATTCGTTCAGCG 788976 Query 21635 TATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAA 21694 | || || ||| |||||| || ||||| || ||||||| | |||| Sbjct 788977 AAAGTGGAGCTTTTGGAGCTTATCCAATTGAGGGCCCAATTCGCCTTTTTCGCTACACAA 789036 Query 21695 TCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTA-CATCGGTTATGNNNNN 21753 || || || || || || || | || ||| |||| | || || ||| Sbjct 789037 GGCATCGTTTCGATGGCGTTGAACAAAT-ATTCTTTTTCTGTAGGGTCCTGTATATAGGT 789095 Query 21754 NNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTA 21813 ||||||||||||||| || || || || || ||||| ||||| ||||| Sbjct 789096 TTCTATCAGAATACTATACATTTCAGAGTGAATGTTCTCCATAGCTATTTGAAAACCGTA 789155 Query 21814 AAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATT 21873 ||| || | || |||| |||||||| | |||| | | ||||||||||| Sbjct 789156 AAAGCAGCGAGCTTCTGGTATCTGAACCTCCTGACTGAATCTCTCGACTAAGTTTTCATT 789215 Query 21874 TACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTT 21933 || || |||||| || || ||||| || || | || || |||| || ||||| Sbjct 789216 GACAATACCATCAGAAGCAGCGAAAAAGGCTAAAACATGCGAAATGAAATGTCTTTCGTC 789275 Query 21934 ATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCA 21993 | | | || ||||| | | ||| || | || ||||| ||||||||||| Sbjct 789276 CTTAGAGAGATTCTTCCATTGCTTCGAGTCTCGAGACAGGTCAACTTCCTCAGTTGTCCA 789335 Query 21994 AAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATAT 22053 ||| ||| || | ||||||| | |||| ||||| || || || ||||||| Sbjct 789336 GAAGGAAGCTTCTGCTTCTTTATACTTTGTCCATATATCTTTGTACTGAATAGGAAATAC 789395 Query 22054 TACAAACC 22061 |||||||| Sbjct 789396 TACAAACC 789403 >seq1059 Length=259062 Score = 104 bits (114), Expect = 2e-17 Identities = 314/470 (67%), Gaps = 15/470 (3%) Strand=Plus/Minus Query 132432 AACCTGGAAAAAGAGGTTGGTTGAAGATaaaaaaaGATTATTTAGAGAATGGGTCTATGG 132491 ||||||| ||||| |||||||| | ||||| |||||| | ||| | |||| Sbjct 145622 AACCTGGTAAAAGGCACTGGTTGAAAGTGAAAAAGGATTATCTTTTCGGTGGTGCAATGG 145563 Query 132492 CAGATTCCGCAGATCTTGTGGTATTAGGTTCTTATTATGGAAAAGGATCAAAGGGAGGAA 132551 ||||| |||||| | |||| | || ||| ||||| | || ||| ||||| | Sbjct 145562 CAGATAGTGCAGATTTGATGGTCCTCGGAGCTTGGTATGGTACTGGCAAAAAAGGAGGGA 145503 Query 132552 TACAATCAATATTTTTAATGGGATGTTATGATTCAGAT--CGTATGATTTGGAAGACTGT 132609 | || | ||| | ||||| |||| || | || || | |||| | | |||| Sbjct 145502 TGATGTCCGTTTTTCTTATGGGCTGTTTCAATCCTGAAAGCGGAAAATTTTGTA--CTGT 145445 Query 132610 AACAAAA-TGTTC--TGGTCATGACGATAAAACGCTTCAACAATTGCAAGAAGATATGGA 132666 ||| ||| || | |||||||||||||||||| || || || |||| || || | || Sbjct 145444 AACTAAAGTGCACACTGGTCATGACGATAAAACACTGGAAAAACTGCAGGATGAACTTGA 145385 Query 132667 ATTAATAAAAATAAGCCGCGAACCTGATAAAATTCCAAAATGGTT-ATCCGTTAATAAAA 132725 | | ||||| || | || | ||| |||| || ||||| | | || | ||| Sbjct 145384 CATGGTGAAAATCAGTCAAGACAGTTCCAAAGTTCCGAATTGGTTGAGCTGTACAAAAAC 145325 Query 132726 TATATTATCCTGATTTTGTAGTGAAGGATCCTAGATCGGCACCC-GTTTGGGAAATTGTG 132784 || | ||| |||||||| | |||||| | | || || |||||||| || Sbjct 145324 CATGAT-TCCCGATTTTGTTGCACGGGATCCCA-AGAAACAGCCAGTTTGGGAGATAACA 145267 Query 132785 GGATCCGGATTTACAAAATCCCAATAT-CATACTGCCGATGGAATTTCTATCAGATTTCC 132843 ||| | | |||||| | | || | |||||||| ||||||||||||||||||||||| Sbjct 145266 GGAGCAGAATTTACTCAG-CATGATGTACATACTGCAGATGGAATTTCTATCAGATTTCC 145208 Query 132844 -AAGATGTCAAAGAATCAGAAATGATAAAAATTGGATTTCTGCTACAAAT 132892 | | || | ||| || ||| |||||||||| ||| | ||||||||| Sbjct 145207 GAGGGTGAC-AAGGATAAGAGATGATAAAAACTGGGAAACGGCTACAAAT 145159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531738616797320