Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq643 187 6e-42 seq74 165 2e-35 >seq643 Length=490110 Score = 187 bits (206), Expect = 6e-42 Identities = 323/462 (70%), Gaps = 12/462 (3%) Strand=Plus/Plus Query 111341 ATATTGGAAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAA 111400 || ||||| || |||||||||| || || ||||||||| | |||||||| ||||| Sbjct 176515 ATTTTGGAGAGGCGTTGTCGAAGAGCTACTCTGGTTTATTAGAGGAAGTACGAATGCCTT 176574 Query 111401 TGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGA 111460 |||||| | ||||| || | |||||||| | |||| | || | | || |||| Sbjct 176575 TGAACTAAGCGATAAAAAAGTTCATATTTGGGACGCAAATAGTACAAGACAGTTCTTAGA 176634 Query 111461 TTCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATG 111520 || ||||| || || | |||||||||||| | || || | || || |||||||| Sbjct 176635 CTCCGTTGGCCTAAAAGATAGAGAAGAAGGTGATTTAGGTCCGATATATGGTTTTCAATG 176694 Query 111521 GCGCCACTTTGGTGCAGACTACAAAACCATGCA---CGACTCATATGATTCACAGGGAAC 111577 | | || ||||| || || |||||| ||||| |||| ||| | | | |||| Sbjct 176695 GAGACATTTTGGAGCTGAGTACAAAGGTATGCATGCAGACT-ATAAAAAT--AAAGGAAT 176751 Query 111578 TGATCAATTACAGAATGTCATTGATCAAATTAAGAACAA-CCCAACTTCTCGTCGCATTA 111636 ||| || ||| |||| || || | ||| ||||| || | | | | ||||| | Sbjct 176752 TGACCAGTTAGCTCATGTAATAAAT-ACTATAAAAACAAGACCTAATGATAGACGCATCA 176810 Query 111637 TTATGAGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTA 111696 | ||| ||||||||||||| | || | | |||||||| | || || || ||| | Sbjct 176811 TAATGTGTGCATGGAACCCTATTGATATCCCAGAAATGGCATTACCTCCTTGCCATTGTT 176870 Query 111697 TGTGCCAGTTTTATGTACACGACGGGATG--CTTTCATGCCAAATGTATCAGCGATCTGC 111754 || |||||||| ||| | || |||| |||||||| ||| | ||||| |||||||| Sbjct 176871 TGGTCCAGTTTTTTGT--AGGAAATGATGAACTTTCATGTCAACTTTATCAACGATCTGC 176928 Query 111755 TGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGC 111796 ||||| || ||||| || || ||||||||||| |||||||| Sbjct 176929 AGATATGGGACTTGGAGTGCCTTTTAATATTGCTAGTTACGC 176970 >seq74 Length=1577532 Score = 165 bits (182), Expect = 2e-35 Identities = 374/553 (68%), Gaps = 16/553 (3%) Strand=Plus/Plus Query 363760 TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAG 363819 || |||||||| || || | || | ||||| ||||||| |||||||||||||| ||| Sbjct 1095308 TCCAATGGGCTCGTCCCTCTACTGAGGGTGTTCAACAATACGGCGAGGTACGTCGATCAG 1095367 Query 363820 GGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATT 363879 || || ||| | |||||||||||||| || || ||||| ||||| || ||| Sbjct 1095368 GGAGGCAACAAGAGACCTGGGGCGTTTGCTATTTACCTAGAGCCGTGGCATGCGGACATT 1095427 Query 363880 TTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT--GCGTGCACGTGATC 363937 || ||||| || || || ||| ||||| || ||||| ||| || || | || | Sbjct 1095428 TTGGAGTTCCTCGACCTGAAGAAGAACACCGGGAAAGA--TATTAATCGCGCCAGGGAAC 1095485 Query 363938 TGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATT 363997 | ||||| || | ||| | ||||| || |||||| | || ||||| | | || Sbjct 1095486 TATTCTACGCTATGTGGATCCCTGACTTGTTCATGAAGAGGGTCGAGGCTGACGGTACTT 1095545 Query 363998 GGTCACTCTTTTGCCCACA-CGAATGTCCA--GGTCTTTCCGATGTATGGGGTGACGACT 364054 |||| || | ||||| || || |||| || ||||||||| ||||| || || | Sbjct 1095546 GGTCTCTGATGTGCCCGCATCG---CTCCAAGGGGCTTTCCGATTGCTGGGGCGAGGAGT 1095602 Query 364055 AT--GTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATT-CCCG 364111 | | ||||||| ||| || || | || || || | |||| || || || || | Sbjct 1095603 TTGAGAAGCTCTAT--GAACGCTACGAGGCTGAAGGCAA-GTTCGTCAGGCAGTTACCGG 1095659 Query 364112 CACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGT 364171 ||| | | ||| ||||||| | || ||| | ||||| || || || || ||| Sbjct 1095660 CACGTGACGTGTGGAAAGCCATCACTGTATCCCAGGTAGAGACTGGTACTCCATACATGC 1095719 Query 364172 TGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGA 364231 | ||||| || | |||||| | || ||||||||| | ||||| || || || | Sbjct 1095720 TCTACAAGGACGCTTGCAACAGGAAAAGTAACCAGCAGAATCTTGGCACGATCAAGAGCA 1095779 Query 364232 GCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACC 364291 ||||| | || || |||||||| || || ||| | ||||| ||| || || || ||| Sbjct 1095780 GCAACTTGTGCACGGAGATTATCGAGTATACCTCCCCCGATGAGGTCGCTGTGTGCAACT 1095839 Query 364292 TTGCGTCGATCGC 364304 | || || ||||| Sbjct 1095840 TGGCCTCCATCGC 1095852 Score = 159 bits (176), Expect = 9e-34 Identities = 373/553 (67%), Gaps = 16/553 (3%) Strand=Plus/Plus Query 363760 TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAG 363819 || |||||||| || || | || | ||||| ||||||| |||||||||||||| ||| Sbjct 1091977 TCCAATGGGCTCGTCCCTCTACTGAGGGTGTTCAACAATACGGCGAGGTACGTCGATCAG 1092036 Query 363820 GGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATT 363879 || || ||| | |||||||||||||| || || ||||| ||||| || ||| Sbjct 1092037 GGAGGCAACAAGAGACCTGGGGCGTTTGCTATTTACCTAGAGCCGTGGCATGCGGACATT 1092096 Query 363880 TTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT--GCGTGCACGTGATC 363937 || ||||| || || || ||| ||||| || ||||| ||| || || | || | Sbjct 1092097 TTGGAGTTCCTCGACCTGAAGAAGAACACCGGGAAAGA--TATTAATCGCGCCAGGGAAC 1092154 Query 363938 TGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATT 363997 | ||||| || | ||| | ||||| || |||||| | || ||||| | | || Sbjct 1092155 TATTCTACGCTATGTGGATCCCTGACTTGTTCATGAAGAGGGTCGAGGCTGACGGTACTT 1092214 Query 363998 GGTCACTCTTTTGCCCACA-CGAATGTCCA--GGTCTTTCCGATGTATGGGGTGACGACT 364054 |||| || | ||||| || || |||| || |||||| | ||||| || || | Sbjct 1092215 GGTCTCTGATGTGCCCGCATCG---CTCCAAGGGGCTTTCCATTTGCTGGGGCGAGGAGT 1092271 Query 364055 AT--GTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATT-CCCG 364111 | | ||||||| ||| || || | || || || | |||| || || || || | Sbjct 1092272 TTGAGAAGCTCTAT--GAACGCTACGAGGCTGAAGGCAA-GTTCGTCAGGCAGTTACCGG 1092328 Query 364112 CACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGT 364171 ||| | | ||| ||||||| | || ||| | ||||| || || || || ||| Sbjct 1092329 CACGTGACGTGTGGAAAGCCATCACTGTATCCCAGGTAGAGACTGGTACTCCTTACATGC 1092388 Query 364172 TGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGA 364231 | ||||| ||| | |||||| | || ||||||||| | ||||| || || || | Sbjct 1092389 TCTACAAGGATGCTTGCAACAGGAAAAGTAACCAGCAGAATCTTGGCACGATCAAGAGCA 1092448 Query 364232 GCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACC 364291 ||||| | || || |||||||| || || ||| | ||||| ||| || || || ||| Sbjct 1092449 GCAACTTGTGCACGGAGATTATCGAGTATACCTCCCCCGATGAGGTCGCTGTGTGCAACT 1092508 Query 364292 TTGCGTCGATCGC 364304 | || || ||||| Sbjct 1092509 TGGCCTCCATCGC 1092521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302946255975326