Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq318 138 1e-27 seq805 118 9e-22 seq792 95.1 1e-14 >seq318 Length=663677 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||||||||| | |||||| | ||||| || | | Sbjct 605688 ATGCAGATCTTTGTCAAAACTCTAACTGGAAAGACCATTACCTTGGAAGTGGAACCATCC 605747 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || ||| || ||| ||||| ||||| || || || || ||| Sbjct 605748 GACACCATCGAGAATGTAAAAGCCAAAATTCAGGACAAGGAAGGAATTCCCCCAGACCAA 605807 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | || || || ||||| ||||||| ||||| | | ||||||||| Sbjct 605808 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCAGAACCTTGTCTGATTATAAC 605867 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| |||||||||||| |||| || || Sbjct 605868 ATTCAGAAAGAATCTACACTTCACTTGGT 605896 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||||||||| | |||||| | ||||| || | | Sbjct 606144 ATGCAGATCTTTGTCAAAACTCTAACTGGAAAGACAATTACCTTGGAAGTTGAACCATCC 606203 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || ||| || || |||||||| ||||| || || || ||| Sbjct 606204 GACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACCAA 606263 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || ||| |||| | || || || ||||| ||||||| | ||| | |||| ||||||| Sbjct 606264 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCA--GATTATA 606321 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||| ||||||||||| ||||||| || | | | |||||||| Sbjct 606322 ACATTCAGAAAGAATCTACGCTTCATTTGGTTCTTCGTCTCAGAGGAGG 606370 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| ||||||||||| | || || | ||||| || ||| Sbjct 605915 AATGCAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACGTTAGAAGTTGA-ACCAT 605973 Query 24050 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 | |||||||||||| | || ||| || || |||||||| ||||| || || || | Sbjct 605974 CTGACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACC 606033 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 |||| ||| |||| | | || || ||||| ||||||| | ||| | | ||||||| Sbjct 606034 AACAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTATCAGATTATA 606093 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||| |||||||||||| |||| || || Sbjct 606094 ACATTCAGAAAGAATCTACACTTCACTTGGT 606124 Score = 111 bits (122), Expect = 1e-19 Identities = 157/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | ||||| ||||| | ||||| ||| | || ||| | || || || | Sbjct 605456 CAGAATGCAGATCTTTGTGAAAACGCTGACTGGTAAAACTATCACCCTTGAGGTTGAA-C 605514 Query 24047 CAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 || | |||||||||||| | || ||| ||||| || || ||||| || || || | Sbjct 605515 CATCTGACACCATCGAGAATGTTAAAGCCAAGATCCAAGATAAGGAAGGAATTCCCCCAG 605574 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGA 24163 | ||||| ||| |||| | | || || ||||| ||||||| | ||| | |||| || Sbjct 605575 ACCAACAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCA--GA 605632 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||||||||||||||| ||| | || || || Sbjct 605633 TTATAACATTCAAAAAGAATCCACACTCCACTTGGT 605668 >seq805 Length=567825 Score = 118 bits (130), Expect = 9e-22 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | ||||||||| | || || | ||||| || ||| | Sbjct 473590 ATGCAAATATTTGTCAAAACTTCAACTGGAAAGACCATAACGTTAGAAGTTGAA-CCATC 473648 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | || ||| || || |||||||| ||||| || || || || Sbjct 473649 TGACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCGCCAGACCA 473708 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTAT 24167 ||| ||| |||| | || || || ||||| ||||||| | ||| | |||||| |||| Sbjct 473709 ACAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGC--TTAT 473766 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||| | |||||| ||| | || || || || Sbjct 473767 AACATTCAGAGAGAATCCACACTCCACTTGGTTTT 473801 >seq792 Length=424820 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || |||||| | || || || | || ||| |||| ||||| || Sbjct 96926 ATGCAAATTTTCGTTAAAACACTCACGGGTAAGACCATCACCCTCGAGGTCGAACCCTCT 96985 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 96986 GACACCATCGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGGATCCCCCCAGATCAG 97045 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | || || || || |||||||||| ||| | ||| || || Sbjct 97046 CAAAGATTGATCTTCGCTGGAAAACAGCTCGAAGATGGTCGAACTCTTTCCGACTACAAT 97105 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || || | ||| | || | |||||||| ||||| Sbjct 97106 ATTCAGAAGGAGTCCACCCTCCATCTCGTCCTCAGATTGAGGGGAGG 97152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429808184460915