Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq90 215 3e-51 seq617 127 1e-24 seq1196 116 2e-21 seq318 96.9 2e-15 >seq90 Length=3439812 Score = 215 bits (238), Expect = 3e-51 Identities = 214/277 (77%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||||||| | || || || | |||||||||||||| ||||| || ||| ||| Sbjct 1384120 AACGTAAATAGAAACGTTAGTGATGTCTTCTACCGCTACAAGATGCCACGGATCATGGCC 1384179 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||||| || ||||||||||||||||| || || ||||| ||||||||| || |||||| Sbjct 1384180 AAGGTGGAAGGTAAGGGAAACGGTATCAAGACTGTCATCGTCAACATGGTAGAGGTCGCT 1384239 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 ||| | || || | || | |||||||| || ||||| || || ||||| || || ||| Sbjct 1384240 AAGTCCCTTGGCAGGCCACCTACCTACCCTACCAAATACTTTGGCTGCGAGCTAGGGGCT 1384299 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 ||||| || || ||| |||||| ||||| ||||||||||| || || || || || || Sbjct 1384300 CAGACCCAATTCGATTTCAAAAATGAGCGGTTCATCGTTAATGGTTCACACGACGCTTCC 1384359 Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGT 6450 ||||||||||| | || ||||| || |||||||||| Sbjct 1384360 AAGCTGCAGGATCTTCTCGACGGGTTCATTCGCAAGT 1384396 Score = 93.3 bits (102), Expect = 3e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 6446 CAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAA 6505 || ||||||||| |||| |||||| ||||| || || || || | || || ||| || Sbjct 1387089 CAGGTTTGTGCTTTGTCCGGAATGTGATAATCCAGAAACTGATTTGATAGTATCTCTGAA 1387148 Query 6506 GAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTGGATTTATC 6565 |||||||||||| ||||| || || ||||| || || ||||| || |||||| | Sbjct 1387149 GAGAAACACCATTTCTCAAGGTTGTAAAGCTTGTGGATACCACGGTGTGCTGGAATCCAA 1387208 Query 6566 ACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 ||||| | | || ||||| ||||| ||||| || Sbjct 1387209 CCACAAGTTGATGACTTTCATTCTGAAAAATCCGCC 1387244 >seq617 Length=521183 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||| | ||||| || |||||||| Sbjct 186682 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGACAGTGGGAATCTCGT 186623 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 186622 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 186588 >seq1196 Length=154185 Score = 116 bits (128), Expect = 2e-21 Identities = 90/104 (87%), Gaps = 6/104 (6%) Strand=Plus/Minus Query 25893 GTTTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT----AGATAGGGGGT 25948 |||| |||| || |||||| ||||| |||||||||||||||||| ||||| || || Sbjct 122461 GTTTTGAATA-GCACGTTCCTTTGGCAGTGGTTTCGCTAGATAGTGGGTAGATACGGTGT 122403 Query 25949 -AATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||| |||||||||||||||||||||||||||| Sbjct 122402 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 122359 Score = 107 bits (118), Expect = 1e-18 Identities = 88/104 (85%), Gaps = 6/104 (6%) Strand=Plus/Minus Query 25893 GTTTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT----AGATAGGGGGT 25948 |||| |||| || | |||||||||| |||||||||||||||||| ||||| | || Sbjct 116135 GTTTTGAATA-GCACATTCCCTTGGCAGTGGTTTCGCTAGATAGTGGGTAGATACAGTGT 116077 Query 25949 -AATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||||| |||| |||||||||||||||||||||||||||| Sbjct 116076 GAATCTCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGA 116033 >seq318 Length=663677 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 38082 CAATCATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTG 38141 |||| || || ||||| | ||| | ||||||||||| || || || ||||| || Sbjct 606379 CAATATTTGCCTCCTCTGAGACGAAGAACCAAATGAAGCGTAGATTCTTTCTGAATGTTA 606320 Query 38142 TAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 ||||| ||||| || | || || | ||||||||| || || || | | |||||| Sbjct 606319 TAATCTGACAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGG 606260 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261 || | ||| | ||| |||||||| ||||| ||||| |||| || || || Sbjct 606259 TCTGGGGGAATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCGGAT 606200 Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||||| || ||||| || || || || | ||||| || || |||||||| Sbjct 606199 GGTTCAACTTCCAAGGTAATTGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 606144 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| || || ||| || |||||||| || ||||| | Sbjct 605688 TACCACCACGGAGACGAAGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTG 605629 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || | ||||||||| ||||| || | | |||||| || | || Sbjct 605628 ACAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGG 605569 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || || || || || ||||||| || || || ||||| Sbjct 605568 GAATTCCTTCCTTATCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCAA 605509 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || ||||||||||| |||| |||||||| || |||||||| Sbjct 605508 CCTCAAGGGTGATAGTTTTACCAGTCAGCGTTTTCACAAAGATCTGCAT 605460 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| ||||| || || || ||||| || ||||| | Sbjct 606144 TACCACCACGGAGACGAAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTG 606085 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || || | || || | ||||||||| ||||| || | | |||||| || | || Sbjct 606084 ATAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGG 606025 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| |||||||| ||||| ||||| |||| || || || ||||| Sbjct 606024 GAATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAA 605965 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| || || || || || || || ||||| || || |||||||| Sbjct 605964 CTTCTAACGTTATGGTCTTTCCAGTTAAAGTTTTGACAAAGATCTGCAT 605916 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||||| ||||| || || || ||||| || |||| Sbjct 605918 CATT-CCACCACGGAGACGGAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAAT 605860 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||||||| | | || || | ||||||||| || || || | | |||||| || | Sbjct 605859 CAGACAAGGTTCTGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTG 605800 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | ||||| |||||| |||||| || ||||||| || || || || Sbjct 605799 GGGGAATTCCTTCCTTGTCCTGAATTTTGGCTTTTACATTCTCGATGGTGTCGGATGGTT 605740 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || ||||| || || || || | ||||| || || |||||||| Sbjct 605739 CCACTTCCAAGGTAATGGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 605688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334847623651583