Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq318 111 1e-19 seq805 107 2e-18 seq792 104 2e-17 >seq318 Length=663677 Score = 111 bits (122), Expect = 1e-19 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || |||| |||||| | ||||| | || || || | || Sbjct 605459 AATGCAGATCTTTGTGAAAACGCTGACTGGTAAAACTATCACCCTTGAGGTTGAACCATC 605518 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| |||||| | || |||| || | || || || ||||| ||||| || || Sbjct 605519 TGACACCATCGAG--AATGTTAAAGCCAAGATCCAA-GATAAGGAAGGAATTCCCCCAGA 605575 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | || ||||| || |||||| | ||||||| || || || ||||| Sbjct 605576 CCAACAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGATTA 605635 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||||||||| || || || || || Sbjct 605636 TAACATTCAAAAAGAATCCACACTCCACTTGGTTCT 605671 >seq805 Length=567825 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || |||| || || || |||| || | ||||| || | ||| Sbjct 473590 ATGCAAATATTTGTCAAAACTTCAACTGGAAAGACCATAACGTTAGAAGTTGAACCATCT 473649 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| |||| |||||| |||||||| || ||||| || |||||| Sbjct 473650 GACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCGCCAGACCAA 473709 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || || || || |||||| | ||||||| || || || | ||| || Sbjct 473710 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGCTTATAAC 473769 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||| | ||||||||| || || || || Sbjct 473770 ATTCAGAGAGAATCCACACTCCACTTGGT 473798 >seq792 Length=424820 Score = 104 bits (114), Expect = 2e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 24989 AAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGT 25048 ||||| || |||||||| || || || || | || ||||| ||||||| |||| || Sbjct 96916 AAACGCCACGATGCAAATTTTCGTTAAAACACTCACGGGTAAGACCATCACCCTCGAGGT 96975 Query 25049 GGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCC 25108 || | |||||||| ||||| | ||| || ||| ||||| |||||||| || Sbjct 96976 CGAACCCTCTGACACCATCGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGGATCCC 97035 Query 25109 ACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGG 25168 || || || || | | || || || || ||||| | ||||||| ||| ||| | Sbjct 97036 CCCAGATCAGCAAAGATTGATCTTCGCTGGAAAACAGCTCGAAGATGGTCGAACTCTTTC 97095 Query 25169 CGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||||||||| || || ||||| || ||| | || || || | || ||||| Sbjct 97096 CGACTACAATATTCAGAAGGAGTCCACCCTCCATCTCGTCCTCAGATTGAGGGGAGG 97152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433199176054295