Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq160 304 1e-77 seq117 125 8e-24 seq17 125 8e-24 seq7894 123 3e-23 seq773 123 3e-23 seq278 123 3e-23 seq57 123 3e-23 seq24165 120 3e-22 >seq160 Length=904994 Score = 304 bits (336), Expect = 1e-77 Identities = 554/803 (69%), Gaps = 6/803 (1%) Strand=Plus/Plus Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA 92980 || |||||||| ||| | || || || | |||| || |||||||||||| | | | Sbjct 788647 AACCTATCAGCAACATACTCAATATATGTACACATTGCATTACAATTCATTCCGATTAAA 788706 Query 92981 CGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT- 93039 | ||||| ||||| || || | || |||| |||||| ||| || || | ||| Sbjct 788707 CTGACAGGCAGAGCTTCAGTTAGAAATTCTTGTTCGATTTTAACAGCATCACAAATGATA 788766 Query 93040 TTC-TATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 ||| | ||| | || | | ||||| || || | || | | | | | ||| |||| Sbjct 788767 TTCGTGATACGTT-CT-TGCGACGGTTTCTGAACTAAATGAGAGAAAAGAAGGCAGGCAA 788824 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 |||| ||| |||||||| || | || ||||| ||||| ||| ||||||||||| | Sbjct 788825 AGTCACAATGCAAACCTTCATCCCTGGAAATCAATTCATTTGAGAAAGTTAAACCTGGCA 788884 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 || || || ||||| | ||| ||||| | |||||||||||||| |||||||| |||| Sbjct 788885 TCAAACCACGCTTCTTCAACCAGAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTT 788944 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATT 93278 | || || || || || ||||| ||||| || ||| | | | || ||| ||||| | Sbjct 788945 CAACTGCAGCGAAAGCTACAATTCGTTCAGCGAAAGTGGAGCTTTTGGAGCTTATCCAAT 789004 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 | | ||||||| || |||||| | |||||| | |||||||| ||||| || | | Sbjct 789005 TGAGGGCCCAATTCGCCTTTTTCGCTACACAAGGCATCGTTTCGATGGCGTTGAACAAAT 789064 Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398 | ||| || | || |||| || || || || | | | |||||||||||| | Sbjct 789065 ATTCTTTTTCTGTAGGGTCCTGTATATAGGTTTCTATCAGAATACTATACATTTCAGAGT 789124 Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458 | | |||||||| || ||||| || ||||| || || | |||||| | ||||| || | Sbjct 789125 GAATGTTCTCCATAGCTATTTGAAAACCGTAAAAGCAGCGAGCTTCTGGTATCTGAACCT 789184 Query 93459 CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518 | ||| |||||||| || | ||||||||||| |||||||| || || || ||||| | Sbjct 789185 CCTGACTGAATCTCTCGACTAAGTTTTCATTGACAATACCATCAGAAGCAGCGAAAAAGG 789244 Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGA- 93577 | || | |||| || |||||| | || || | || || | || || | | || Sbjct 789245 CTAAAACATGCGAAATGAAATGTCTTTCGTCCTTAGAGAGATTCTTCC-ATTGCTTCGAG 789303 Query 93578 TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATA 93637 ||| || || || ||||| || ||||| || || |||||||||| ||| ||| | Sbjct 789304 TCTCGAGACAGGTCAACTTCCTCAGTTGTCCAGAAGGAAGCTTCTGCTTCTTTATACTTT 789363 Query 93638 TCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGT 93697 |||||| |||| || ||||| ||||||| ||||| || ||| || ||| |||| Sbjct 789364 GTCCATATATCTTTGTACTGAATAGGAAATACTACAAACCGTCCAGGATTTTCTCTTAGG 789423 Query 93698 AACGGCTCTAGTTGTGGGTCAAA 93720 | || ||||| | ||| || || Sbjct 789424 AGGGGTTCTAGCTCTGGATCGAA 789446 >seq117 Length=1101300 Score = 125 bits (138), Expect = 8e-24 Identities = 86/96 (90%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 765841 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 765782 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 ||||||||||||||||||||||||| || || ||| Sbjct 765781 GTGGGTTCGAACCCCACACCTGACATTTTTTTTTTG 765746 >seq17 Length=1898645 Score = 125 bits (138), Expect = 8e-24 Identities = 86/96 (90%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 1027430 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAAAGGGAGC 1027371 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 ||||||||||||||||||||||||| || || ||| Sbjct 1027370 GTGGGTTCGAACCCCACACCTGACATTTTTTTTTTG 1027335 >seq7894 Length=10952 Score = 123 bits (136), Expect = 3e-23 Identities = 85/95 (89%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126259 ATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TC 126316 |||| |||||||||||||||| |||||||||||||||| ||||| |||||||||| Sbjct 10857 ATTTCAAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGCTCTGGTTCCCGAAT 10916 Query 126317 GGGAGCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||||||||||||||||||||||||| || Sbjct 10917 GGGAGCGTGGGTTCGAACCCCACACCTGACAATTT 10951 >seq773 Length=374179 Score = 123 bits (136), Expect = 3e-23 Identities = 83/92 (90%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||| ||||| |||||||||| |||||| Sbjct 202790 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGCTCTGGTTCCCGAATGGGAGC 202731 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||||||||||||||||||| || || Sbjct 202730 GTGGGTTCGAACCCCACACCTGACAATTTTTT 202699 >seq278 Length=1775425 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 1468751 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAAAGGGAGC 1468810 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 1468811 GTGGGTTCGAACCCCACACCTGACA 1468835 >seq57 Length=4625438 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 2191844 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGTTCTGGTTCCCGAAAGGGAGC 2191903 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 2191904 GTGGGTTCGAACCCCACACCTGACA 2191928 >seq24165 Length=4521 Score = 120 bits (132), Expect = 3e-22 Identities = 94/111 (85%), Gaps = 6/111 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||| ||||| |||||||||| |||||| Sbjct 3302 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGAAAGGGAGC 3361 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGA----ATTTTTGTT 126369 ||||||||||||||||||||||||| | | || || | ||||||||| Sbjct 3362 GTGGGTTCGAACCCCACACCTGACATACTTTTTTTTTACTTGATTTTTGTT 3412 Score = 87.8 bits (96), Expect = 2e-12 Identities = 85/106 (80%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGC-CAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 |||||||||||||||| |||||||||||| ||| ||||| |||||||||| || || Sbjct 2832 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCTAAGACTTAAGTTCTGGTTCCCGAAAGGTAG 2891 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATT-ATTGGAATTTTT 126366 | ||| ||| ||||||||| |||| | || || ||| || ||||| Sbjct 2892 CTTGGATTCAAACCCCACAACTGATATTTTTTTCATTTGATTTTTT 2937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556691006181320