Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq253 156 4e-33 seq318 123 2e-23 seq74 118 9e-22 seq199 114 1e-20 seq792 113 4e-20 seq12025 109 5e-19 >seq253 Length=804807 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || |||||||||||||| || ||||| || |||||||||| || ||| | Sbjct 281597 AAGATGCAGATCTTTGTTAAAACTTTGACTGGTAAGACCATCACTCTTGAGGTCGAACCT 281538 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || || |||||| |||||||||| |||||||| ||| Sbjct 281537 TCGGATACCATCGAAAATGTTAAGGCTAAGATTCAAAACAAGGAGGGAATTCCACCAGAT 281478 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||| | || ||||| || ||||| || || ||| || || | || || ||| Sbjct 281477 CAACAGCGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGACGTACTTTGTCGGACTAC 281418 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| ||||| || | || | || ||||||||| | |||||| Sbjct 281417 AATATACAAAAGGAATCTACTCTTCACCTTGTATTGCGATTGAGGGGAGGT 281367 >seq318 Length=663677 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || |||||||| |||| ||||| || ||| | | Sbjct 605460 ATGCAGATCTTTGTGAAAACGCTGACTGGTAAAACTATCACCCTTGAGGTTGAACCATCT 605519 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| || || ||||| ||||| || ||||| || || ||| Sbjct 605520 GACACCATCGAGAATGTTAAAGCCAAGATCCAAGATAAGGAAGGAATTCCCCCAGACCAA 605579 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| | || ||| ||| ||| | || ||||| ||| Sbjct 605580 CAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGATTATAAC 605639 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||||||| | || || ||| | || | || || ||| Sbjct 605640 ATTCAAAAAGAATCCACACTCCACTTGGTTCTTCGTCTCCGTGGTGGT 605687 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||||||||| || || || | || | ||||| ||| | | Sbjct 605916 ATGCAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACGTTAGAAGTTGAACCATCT 605975 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| ||||| |||||||| ||||| ||||| || || ||| Sbjct 605976 GACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACCAA 606035 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| | || ||| ||| ||| | || ||||| ||| Sbjct 606036 CAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTATCAGATTATAAC 606095 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| |||||||| || | || || ||| | || | || || ||| Sbjct 606096 ATTCAGAAAGAATCTACACTTCACTTGGTTCTTCGTCTCCGTGGTGGT 606143 >seq74 Length=1577532 Score = 118 bits (130), Expect = 9e-22 Identities = 480/751 (64%), Gaps = 8/751 (1%) Strand=Plus/Minus Query 129405 TTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAATTTTGGTGTTCAACAC 129464 |||||||||||| |||| || | | || | |||||| |||| | ||||| | Sbjct 1092810 TTCGCAACTCGCCTCCAGGGCCGCGTAGTAGAGGGTTTCGAAGATTTGCTTATTCAAAAG 1092751 Query 129465 TTTGGCCTGGTCGCTTTCGTACGGCATACGCAACATGGCAAATGTGTCGGCCAAACCTTG 129524 | ||||| ||||| ||| | ||||| |||| | | || | ||| || || || || Sbjct 1092750 TGCCGCCTGTTCGCTATCGAAGGGCATGCGCATGAGGATGAACGCGTCCGCTAACCCCTG 1092691 Query 129525 AATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATA 129584 || || | |||||||| || ||| | |||| || ||| | ||| || Sbjct 1092690 GATCCCGATTCCGATGGGCCGGTGTCTCATATTCGACAGCCTCGCCTCGGGTATGGGGTA 1092631 Query 129585 GTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAA 129644 |||||| | ||| || ||||||| || ||| || | || | || |||| | | | || Sbjct 1092630 GTAGTTCACGTCGATTATTTTGTCCAAGTTCCTGGCGACCACCTTAGTTATTTCTCTCAA 1092571 Query 129645 CATTTCAAAATTGTACTCGCCTAC-ATCGATGTCGACAAATTGATTGACACAAATCGAGG 129703 | | | |||| ||| | | || |||| | ||||| |||||| || |||| Sbjct 1092570 CTTCTGGAAATCGTA-TGTCTCACGATCGGGCTTTACAAACATGTTGACAGCGATGGAGG 1092512 Query 129704 CCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAAT 129763 |||| ||||| || || || | | | ||||||| ||| || | |||||| | Sbjct 1092511 CCAAGTTGCACACAGCGACCTCATCGGGGGAGGTATACTCGATAATCTCCGTGCACAAGT 1092452 Query 129764 TACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGT 129823 | || | || || ||||| | || || || ||||||||| ||||||||||||| |||| Sbjct 1092451 TGCTGCTCTTGATCGTGCCAAGATTCTGCTGGTTACTTTTCCTGTTGCAAGCATCCTTGT 1092392 Query 129824 ACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAACAAGTCTC 129883 | | |||||| || || || || || || || | | | |||| | ||| ||| | Sbjct 1092391 AGAGCATGTAAGGAGTACCAGTCTCTACCTGGGATACAGTGATGGCTTTCCACACGTCAC 1092332 Query 129884 GAGCCTTGATCTGTCTTACAAATTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAA 129943 | ||| | ||| || || || ||||| |||||| |||| || | |||| Sbjct 1092331 GTGCCGGTAACTGCCTGACGAACTTGCCTTCAGCCTCGTAGCGTTCATAGAGCTTCTCAA 1092272 Query 129944 ATTCTGAGCCGTGTACGGTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACA 130003 | || ||| || ||| | || | |||| ||||||| | ||| Sbjct 1092271 ACTCCTCGCCCCAGCAAATGGAAAGCCCCTTGGAGCGATGCGGGCACATCAGAGACCAAG 1092212 Query 130004 TTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAAT 130063 | || || || ||||| | ||||| ||||| || || | ||||| ||||| || | | Sbjct 1092211 TACCGTCAGCCTCGACCCTCTTCATGAACAAGTCAGGGATCCACATAGCGTAGAATAGTT 1092152 Query 130064 --CTCGCGC-TTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAA 130120 || |||| || |||| | || |||| ||||| || ||||| || ||| Sbjct 1092151 CCCTGGCGCGATTAATATCTT---TCCCGGTGTTCTTCTTCAGGTCGAGGAACTCCAAAA 1092095 Query 130121 TGTCGGCGTGCCACGGTTCAACATAAATTGC 130151 |||| || |||||||| || | ||||| || Sbjct 1092094 TGTCCGCATGCCACGGCTCTAGGTAAATAGC 1092064 >seq199 Length=980398 Score = 114 bits (126), Expect = 1e-20 Identities = 161/227 (71%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || |||||||||||||| || ||||| || |||||||||| || | | | Sbjct 850173 AAGATGCAGATCTTTGTTAAAACTTTGACTGGTAAGACCATCACTCTTGAGGTCGGATCT 850232 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||| | | || || | || || ||||||||||||||||| |||||||| || Sbjct 850233 TCGGATATCATCGAAAATGTTAAGGCTAAGATTCAAGACAAGGAGGGAATTCCACCAGAC 850292 Query 22336 CAACAACGTCT--------TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCT 22387 ||||| || | || ||||| || ||||| || || ||| || || | | Sbjct 850293 CAACAGTGTTTAATTTTTGCATTTTTGCTGGTAAACAATTGGAAGATGGACGTACTTTGT 850352 Query 22388 CCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 | || ||||| || ||||| |||||||| | || | || |||||| Sbjct 850353 CGGACTACAATATACAAAAGGAATCCACTCTTCACCTTGTATTGCGA 850399 >seq792 Length=424820 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||||||||| |||||||| | || ||||| || |||| || || || ||| || | Sbjct 96925 GATGCAAATTTTCGTTAAAACACTCACGGGTAAGACCATCACCCTCGAGGTCGAACCCTC 96984 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || ||||||||||| || || || || ||||| Sbjct 96985 TGACACCATCGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGGATCCCCCCAGATCA 97044 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | | || || || || |||||| | || ||| || || | ||||| ||||| Sbjct 97045 GCAAAGATTGATCTTCGCTGGAAAACAGCTCGAAGATGGTCGAACTCTTTCCGACTACAA 97104 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||||| || || |||||| | ||| | || | ||||| | |||||| || Sbjct 97105 TATTCAGAAGGAGTCCACCCTCCATCTCGTCCTCAGATTGAGGGGAGGTATT 97156 >seq12025 Length=7061 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || |||||||||||||| || ||||| || |||||||||| || ||| Sbjct 4224 AAGATGCAGATCTTTGTTAAAACTTTGACTGGTAAGACCATCACTCTTGAGGTCGAACTT 4283 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || || ||||||||||||||| | |||||||| ||| Sbjct 4284 TCGGATACCATCGAAAATGTTAAGGCTAAGATTCAAGACAAGGAGAGAATTCCACCAGAT 4343 Query 22336 CAACAACGTCTTATATTTGC 22355 ||||| ||| | || ||||| Sbjct 4344 CAACAGCGTTTAATTTTTGC 4363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419603219194045