Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq318 183 6e-41 seq805 158 2e-33 seq792 154 3e-32 seq199 107 4e-18 >seq318 Length=663677 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | |||||||| || || || ||||| || ||||||||||| | Sbjct 605916 TTCCACCACGGAGACGGAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAG 605857 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || || |||||||| | || || || ||||| || | |||||||||||| || | Sbjct 605856 ACAAGGTTCTGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGG 605797 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||||||||| ||||| || || || || |||||||||||| | || ||| | Sbjct 605796 GAATTCCTTCCTTGTCCTGAATTTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCCA 605737 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||| ||||| ||||| || || || ||||| || |||||||| Sbjct 605736 CTTCCAAGGTAATGGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 605688 Score = 172 bits (190), Expect = 1e-37 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || || ||||| | || || | ||||| || ||||| || ||||| || ||||||||| Sbjct 606376 TATTTGCCTCCTCTGAGACGAAGAACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAA 606317 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || || | || | |||||||| | || || || ||||| || | |||||||||||| Sbjct 606316 TCTGACAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCT 606257 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || |||||||| || |||||||| || || || || ||| |||||||||||| | || | Sbjct 606256 GGGGGAATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCGGATGGT 606197 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| || || ||||| || || || ||||| || |||||||| Sbjct 606196 TCAACTTCCAAGGTAATTGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 606144 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||||| |||||||| ||||||||||| || Sbjct 605686 CCACCACGGAGACGAAGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTGAC 605627 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | || || || || || || | |||||||||||| || ||| Sbjct 605626 AAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 605567 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||| ||||| || || || |||||||||||| | || ||| || Sbjct 605566 ATTCCTTCCTTATCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCAACC 605507 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | |||||| ||||| || || || || || || || ||||||||| || Sbjct 605506 TCAAGGGTGATAGTTTTACCAGTCAGCGTTTTCACAAAGATCTGCATTCTG 605456 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || || ||||| || ||||||||||| || Sbjct 606142 CCACCACGGAGACGAAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGAT 606083 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | || || || || || || | |||||||||||| || ||| Sbjct 606082 AAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 606023 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || |||||||| || || || || ||| |||||||||||| | || ||| ||| Sbjct 606022 ATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACT 605963 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || ||||| ||||| || | || ||||| || ||||||||| Sbjct 605962 TCTAACGTTATGGTCTTTCCAGTTAAAGTTTTGACAAAGATCTGCATT 605915 >seq805 Length=567825 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || || |||||||| || ||||| ||| | || ||||||||| | || Sbjct 473816 CCACCACGGAGACGAAAAACCAAGTGGAGTGTGGATTCTCTCTGAATGTTATAAGCTGAC 473757 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | || || || ||||| || | |||||||||||| || ||| Sbjct 473756 AAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGCGGA 473697 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || |||||||| || || || || ||| |||||||||||| | || ||| ||| Sbjct 473696 ATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACT 473637 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| ||||| || || ||||| ||||| ||||| Sbjct 473636 TCTAACGTTATGGTCTTTCCAGTTGAAGTTTTGACAAATATTTGCAT 473590 >seq792 Length=424820 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || |||||||| || || || || || ||||| || || | |||||||| | ||| Sbjct 97128 TGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGAAAGAGTTCGACCATCTTCGAGCTGT 97069 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || | |||||| || || || || || |||||||||||||| ||||| Sbjct 97068 TTTCCAGCGAAGATCAATCTTTGCTGATCTGGGGGGATCCCTTCCTTGTCTTGGATCTTA 97009 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||||||| ||||||||||| | | ||| || || | ||||||||| || |||||| Sbjct 97008 GCCTTGACGTTTTCGATGGTGTCAGAGGGTTCGACCTCGAGGGTGATGGTCTTACCCGTG 96949 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| || ||||| Sbjct 96948 AGTGTTTTAACGAAAATTTGCAT 96926 >seq199 Length=980398 Score = 107 bits (118), Expect = 4e-18 Identities = 157/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||||||| | ||| || ||||| || ||||| || || || || || | || | ||| Sbjct 850398 CGCAATACAAGGTGAAGAGTGGATTCCTTTTGTATATTGTAGTCCGACAAAGTACGTCCA 850339 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATG--------AGTCTTTGTTGGTCGGGTGGAATGC 68358 ||||| || || || || || || ||| | | |||||||| |||||||| | Sbjct 850338 TCTTCCAATTGTTTACCAGCAAAAATGCAAAAATTAAACACTGTTGGTCTGGTGGAATTC 850279 Query 68359 CTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCA 68418 | ||||||||||||||||| ||||| || |||||| | || | ||| | || || | Sbjct 850278 CCTCCTTGTCTTGAATCTTAGCCTTAACATTTTCGATGATATCCGAAGATCCGACCTCAA 850219 Query 68419 AGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || || | || || || || |||||||| Sbjct 850218 GAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCAT 850176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921341385809960