Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq318 86.0 4e-12 seq253 84.2 2e-11 >seq318 Length=663677 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | ||||| ||||| || || ||||| || | ||| ||| | | Sbjct 605915 AATGCAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACGTTAGAAGTTGAACCATC 605974 Query 21893 AGAAACGGTGGCCGATCTT--AAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 || || | | || | | |||| |||| | || |||||||| | || | || Sbjct 605975 TGACACCATCGA-GAACGTGAAAGCTAAAA-TCCAAGACAAAGAGGGCATTCCCCCAGAC 606032 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | ||||||||||| |||||||| |||||| ||| | | ||||| Sbjct 606033 CAACAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTATCAGATTAT 606092 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| |||||||| ||||| |||| | ||| | || || || Sbjct 606093 AACATTCAGAAAGAATCTACACTTCACTTGGTTCTTCGTCTCCGTGGTGG 606142 >seq253 Length=804807 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||| ||||| || ||| ||||||| || || || || ||||| || | || ||| | Sbjct 281598 CAAGATGCAGATCTTTGTTAAAACTTTGACTGGTAAGACCATCACTCTTGAGGTCGAACC 281539 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | || || | | || ||||| || ||| | || ||||| | || | | Sbjct 281538 TTCGGATACCATCGAAAATGTTAAGGCTAAGATTCAAAACAAGGAGGGAATTCCACCAGA 281479 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 |||||| | | || |||||||| |||||| | |||||| | ||| || | || || Sbjct 281478 TCAACAGCGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGACGTACTTTGTCGGACTA 281419 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||| || ||||||||||||||||| | ||||| || || | ||||| Sbjct 281418 CAATATACAAAAGGAATCTACTCTTCACCTTGTATTGCGATTGAGGGGAGG 281368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358018333190122