Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq318 131 1e-25 seq253 104 2e-17 seq199 84.2 2e-11 >seq318 Length=663677 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||| | |||||||||||| |||||||| ||||| || || || |||||| Sbjct 606353 AACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCTGACAAGGTTCGGCCATCTTC 606294 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 |||||||| |||||| |||| | | |||||||| || |||||||| |||||||| Sbjct 606293 CAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCTTG 606234 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || || ||| | | || | |||||||| | ||| || |||| ||| | || || Sbjct 606233 GATTTTAGCTTTCACGTTCTCGATGGTGTCGGATGGTTCAACTTCCAAGGTAATTGTCTT 606174 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||||||| ||||| |||||||| Sbjct 606173 TCCAGTTAGAGTTTTGACAAAGATCTGCAT 606144 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| || || | ||||||||||| |||||||| ||||| Sbjct 605917 ATTCCACCACGGAGACGGAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCA 605858 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | |||||| |||||||| |||||| |||| | | |||||||| || Sbjct 605857 GACAAGGTTCTGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGG 605798 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| || ||||| | || | |||||||| | ||| Sbjct 605797 GGAATTCCTTCCTTGTCCTGAATTTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCC 605738 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || || |||||||| ||||| |||||||| Sbjct 605737 ACTTCCAAGGTAATGGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 605688 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || ||||||||||||||||| ||||| Sbjct 605689 ATACCACCACGGAGACGAAGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCT 605630 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| |||||||| ||||| |||| | | |||||||| || Sbjct 605629 GACAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGG 605570 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||||| ||| | | || | |||||| | | ||| Sbjct 605569 GGAATTCCTTCCTTATCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCA 605510 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || ||||| ||||| ||||| |||||||| Sbjct 605509 ACCTCAAGGGTGATAGTTTTACCAGTCAGCGTTTTCACAAAGATCTGCAT 605460 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | ||||||||||| |||||||| |||| Sbjct 606145 ATACCACCACGGAGACGAAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAAT-- 606088 Query 114213 CTCATA--GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 || ||| || || |||||| |||||||| ||||| |||| | | |||||||| | Sbjct 606087 CTGATAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTG 606028 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 | |||||||| |||||||| || || ||| | | || | |||||| | | || Sbjct 606027 GGGGAATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTT 605968 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || | || | || || || || | |||||| ||||| |||||||| Sbjct 605967 CAACTTCTAACGTTATGGTCTTTCCAGTTAAAGTTTTGACAAAGATCTGCAT 605916 >seq253 Length=804807 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| ||||| || ||||| || || |||||| |||||| | |||||||||| Sbjct 281398 GTAGATTCCTTTTGTATATTGTAGTCCGACAAAGTACGTCCATCTTCCAATTGTTTACCA 281457 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | ||||||||| || || ||||| || || |||| |||||| || Sbjct 281458 GCAAAAATTAAACGCTGTTGATCTGGTGGAATTCCCTCCTTGTTTTGAATCTTAGCCTTA 281517 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | ||| || | | |||||| || | || | || || || |||| |||| Sbjct 281518 ACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTTACCAGTCAAAGTT 281577 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 281578 TTAACAAAGATCTGCAT 281594 >seq199 Length=980398 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/205 (69%), Gaps = 8/205 (4%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| ||||| || ||||| || || |||||| |||||| | |||||||||| Sbjct 850380 GTGGATTCCTTTTGTATATTGTAGTCCGACAAAGTACGTCCATCTTCCAATTGTTTACCA 850321 Query 114246 GCGTAGATG--------AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCT 114297 || | ||| | || ||||||||| || ||||| || || ||||| ||||| Sbjct 850320 GCAAAAATGCAAAAATTAAACACTGTTGGTCTGGTGGAATTCCCTCCTTGTCTTGAATCT 850261 Query 114298 TTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGG 114357 | || | | ||| | | | || | ||| |||| || | || | || || || | Sbjct 850260 TAGCCTTAACATTTTCGATGATATCCGAAGATCCGACCTCAAGAGTGATGGTCTTACCAG 850201 Query 114358 TCAGAGTTTTTACAAAAATCTGCAT 114382 ||| |||||| ||||| |||||||| Sbjct 850200 TCAAAGTTTTAACAAAGATCTGCAT 850176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420009498375516