Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq74 309 6e-79 seq160 129 1e-24 >seq74 Length=1577532 Score = 309 bits (342), Expect = 6e-79 Identities = 929/1416 (66%), Gaps = 51/1416 (4%) Strand=Plus/Minus Query 243766 CTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCAT 243825 |||||| |||| ||||||||| || |||||||| || | ||| | | || |||||| Sbjct 1093401 CTTGGTTCTCAAGTAGTACATCCCAGTCTTGAGACCCTTTTTCCACCCATAGAAGTGCAT 1093342 Query 243826 GGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGA 243885 | | |||| || | | |||||| ||| || | || || | | Sbjct 1093341 CGAAGACAGCG-CTCCGTACGTAGCTTT--------CTC---CATATGGATATTCAAGCT 1093294 Query 243886 CTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGA 243945 ||||||||| |||| ||||| | | | || || |||||| |||| | ||||||| || Sbjct 1093293 CTGGCTCTGATCGATGAAGGCCCCTCTATCCGCCGCCATGTTGATAATAACCTTCTGCGA 1093234 Query 243946 TATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTG 244005 ||||| || | |||||||| || | ||||||| || || | || |||||| || Sbjct 1093233 AATCTCCCACACGGTCTTGTAAATAGCTTTGAGGTTATCCGGAATGCCGGGGATGTTTTG 1093174 Query 244006 CACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCC--CAAG 244063 | || || || | ||| || ||| | |||| |||||| ||||| | || Sbjct 1093173 GATAGACCCGAAGTTGGCGAGGACTTGGTTCTTCATGGTATCGTCCCACAAGGAGGCATC 1093114 Query 244064 CGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGG 244123 || | || | | || |||||| ||| || ||||| ||||| || || || || | Sbjct 1093113 CGTT--AGATCATTGATCAGGTGTTGGTTGACAACCTGGAACTCCCCAGAAAGGACCCTC 1093056 Query 244124 CGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCC 244183 | ||||| || | || ||||||||| ||| |||||||||| || ||||| Sbjct 1093055 CTGGTGTAGATATTCGAGGTGTAAGGCTCGATGGACTCGTTGTTGCCCAGGATTTGCGCA 1092996 Query 244184 GTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG 244243 || |||||| |||||||| | | | || || | || || ||| | ||| Sbjct 1092995 GTAGACGCAGTAGGCATGGGAGCGAGTAACAAGGAATTGCGTACCCCATGCTTGGCGAT- 1092937 Query 244244 CGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCC-TCGCGTTTGAGGCCCCA 244302 | | ||| ||| | | || | || |||| || ||| | | | |||||| Sbjct 1092936 -----TTT---CTCCTTCAAAGCAGACCAGTCCCAGAGATCTGTCG-GAGTAACGCCCCA 1092886 Query 244303 CATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACC 244362 |||||| |||||| | || ||||| || || ||||| |||||||||| || || || Sbjct 1092885 CATGTCGTACTGCAAGATACCTTTGCTTACAGGACTGCCTTCGTAGGTCGAATAAGGGCC 1092826 Query 244363 GTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGAT 244422 ||| || ||| || | || ||| | || ||||| |||||||||| ||| |||||||| Sbjct 1092825 GTCTTTCTCGGCTAGTTCGCAACTCGCCTCCAGGGCCGCGTAGTAGAGGGTTTCGAAGAT 1092766 Query 244423 CATCTTGTTCAT--GTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAG 244480 ||| |||| || || ||| ||| |||||| |||| ||| | ||||| Sbjct 1092765 TTGCTTATTCAAAAGTGCCG--CCTGTTCGCTATCGAAGGGCATGCGCATGAGGATGAAC 1092708 Query 244481 ACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATG 244540 |||| || | ||||| | ||||| |||||||| | ||||| | | || || || | Sbjct 1092707 GCGTCCGCTAACCCCTGGATCCCGATTCCGATGGGCCGGTGTCTCATATTCGACAGCCTC 1092648 Query 244541 GCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATG 244600 || ||||| | |||||| |||| ||||||| | |||| | ||| | || || || Sbjct 1092647 GCCTCGGGTATGGGGTAGTAGTTCACGTCGATTATTTTGTCCAAGTTCCTGGCGACCACC 1092588 Query 244601 CGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATC 244660 | || || | ||| || ||||| || ||| |||| | | | Sbjct 1092587 TTAGTTATTTCTCTCAACTTCTGGAAATCGTAT--GT-------CTCA-CGATCGGGCT- 1092539 Query 244661 CTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG 244720 | |||||| ||||| |||| | ||||| |||||| || || ||||| || | | | Sbjct 1092538 -TTACAAACATGTTGACAGCGATGGAGGCCAAGTTGCACACAGCGACCTCATCGGGGGAG 1092480 Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 || |||| || |||||| ||||| | ||| |||| |||||| ||||| || | ||| || Sbjct 1092479 GTATACTCGATAATCTCCGTGCACAAGTTGCTGCTCTTGATCGTGCCAAGATTCTGCTGG 1092420 Query 244781 TTGGACTTGGC--GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCT 244838 || |||| | |||||| || ||||||||||||||| | || || ||||| | || Sbjct 1092419 TT--ACTTTTCCTGTTGCAAGCATCCTTGTAGAGCATGTAAGGAGTACCAGTCTCTACCT 1092362 Query 244839 GGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTG-CGAGCCTTGCCC 244897 ||| || || | ||||| | ||| | ||| | | |||| ||| |||||| Sbjct 1092361 GGGATACAGTGATGGCTTTCCACACGTCACGTGCCGGTAACTGCCTGACGA-ACTTGCCT 1092303 Query 244898 TCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAG-ACCTCGTCTAGGCC 244956 || ||||||||||| || || ||| ||||| ||||||| | | | || Sbjct 1092302 TCAGCCTCGTAGCGTTCATAGAGCTTCTCAAACTCCTCGCCCCAGCAAATGGAAAGCCCC 1092243 Query 244957 GGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAA 245016 || ||| | ||||||||| ||| ||| ||| | ||| |||||||| |||||| Sbjct 1092242 TTGGAGCGATG-CGGGCACATCAGAGACCAAGTACCGTCAGCCTCGACCCTCTTCATGAA 1092184 Query 245017 GAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGT 245076 | ||| |||||||| | || | ||| || ||||||| | | || || || Sbjct 1092183 CAAGTCAGGGATCCACATAGCGTAGAATAGTTCCCTGGCGCGATTAATATCTTTCCCGGT 1092124 Query 245077 GTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGC 245136 ||||||| |||| || | || || || | ||| | ||||| ||||| | ||| | ||| Sbjct 1092123 GTTCTTCTTCAGGTCGAGGAACTCCAAAATGTCCGCATGCCACGGCTCTAGGTAAATAGC 1092064 Query 245137 GAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 | || || || | ||||||||||||||| || || Sbjct 1092063 AAACGCCCCAGGTCTCTTGTTGCCTCCCTGATCGAC 1092028 Score = 289 bits (320), Expect = 5e-73 Identities = 822/1246 (66%), Gaps = 39/1246 (3%) Strand=Plus/Minus Query 243936 CCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTT 243995 ||||||| || ||||| || | |||||||| || | ||||||| || || | || Sbjct 1096574 CCTTCTGCGAAATCTCCCACACGGTCTTGTAAATAGCTTTGAGGTTATCCGGAATGCCGG 1096515 Query 243996 CGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACA 244055 |||||| || | || || || | ||| || ||| | |||| |||||| ||||| Sbjct 1096514 GGATGTTTTGGATAGACCCGAAGTTGGCGAGGACTTGGTTCTTCATGGTATCGTCCCACA 1096455 Query 244056 GGCC--CAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGA 244113 | || || | || | | || |||||| ||| || ||||| ||||| || || Sbjct 1096454 AGGAGGCATCCGTT--AGATCATTGATCAGGTGTTGGTTGACAACCTGGAACTCCCCAGA 1096397 Query 244114 CAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAG 244173 || || | | ||||| || | || ||||||||| ||| |||||||||| Sbjct 1096396 AAGGACCCTCCTGGTGTAGATATTCGAGGTGTAAGGCTCGATGGACTCGTTGTTGCCCAG 1096337 Query 244174 TATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTG 244233 || ||||| || |||||| |||||||| | | | || || | || || || Sbjct 1096336 GATTTGCGCAGTAGACGCAGTAGGCATGGGAGCGAGTAACAAGGAATTGCGTACCCCATG 1096277 Query 244234 CCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCC-TCGCGTT 244292 | | ||| | | ||| ||| | | || | || |||| || ||| | Sbjct 1096276 CTTGGCGAT------TTT---CTCCTTCAAAGCAGACCAGTCCCAGAGATCTGTCG-GAG 1096227 Query 244293 TGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCG 244352 | | |||||||||||| |||||| | || ||||| || || ||||| |||||||||| Sbjct 1096226 TAACGCCCCACATGTCGTACTGCAAGATACCTTTGCTTACAGGACTGCCTTCGTAGGTCG 1096167 Query 244353 GGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGG 244412 || || ||||| || ||| || | || ||| | || ||||| |||||||||| || Sbjct 1096166 AATAAGGGCCGTCTTTCTCGGCTAGTTCGCAACTCGCCTCCAGGGCCGCGTAGTAGAGGG 1096107 Query 244413 TCTCGAAGATCATCTTGTTCAT--GTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCAT 244470 | ||||| || ||| |||| || || ||| ||| |||||| |||| ||| Sbjct 1096106 TTTCGAATATTTGCTTATTCAAAAGTGCCG--CCTGTTCGCTATCGAAGGGCATGCGCAT 1096049 Query 244471 CATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTT 244530 | ||||| |||| || | ||||| | ||||| |||||||| | ||||| | | || Sbjct 1096048 GAGGATGAACGCGTCCGCTAACCCCTGGATCCCGATTCCGATGGGCCGGTGTCTCATATT 1095989 Query 244531 GGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCG 244590 || || | || ||||| | |||||| |||| ||||||| | |||| | ||| | Sbjct 1095988 CGACAGCCTCGCCTCGGGTATGGGGTAGTAGTTCACGTCGATTATTTTGTCCAAGTTCCT 1095929 Query 244591 GGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGC 244650 || || || | || || | ||| || ||||| || ||| | Sbjct 1095928 GGCGACCACCTTAGTTATTTCTCTCAACTTCTGGAAATCGTAT--GT-------CTCA-C 1095879 Query 244651 GATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTC 244710 ||| | | | | |||||| ||||| |||| | ||||| |||||| || || ||||| Sbjct 1095878 GATCGGGCT--TTACAAACATGTTGACAGCGATGGAGGCCAAGTTGCACACAGCGACCTC 1095821 Query 244711 CTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAG 244770 || | | ||| |||| || |||||| ||||| | ||| |||| |||||| ||||| || Sbjct 1095820 ATCGGGGGAGGTATACTCGATAATCTCCGTGCACAAGTTGCTGCTCTTGATCGTGCCAAG 1095761 Query 244771 GTGCTGGTGATTGGACTTGGC--GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCG 244828 | ||| || || |||| | |||||| |||||||||||||||||| | || || Sbjct 1095760 ATTCTGCTGGTT--ACTTTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTATGGAGTACCA 1095703 Query 244829 GTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTG-CG 244887 ||||| | ||||| || || | ||||| | ||| | ||| | | |||| || Sbjct 1095702 GTCTCTACCTGGGATACAGTGATGGCTTTCCACACGTCACGTGCCGGTAACTGCCTGACG 1095643 Query 244888 AGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTC 244947 | |||||| || ||||||||||| || || ||| ||||| ||||||| || Sbjct 1095642 A-ACTTGCCTTCAGCCTCGTAGCGTTCATAGAGCTTCTCAAACTCCTCGCCCCAGCAATC 1095584 Query 244948 GTCTAG-GCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCC 245006 | || || || ||| | ||||||||| ||| ||| ||| | ||| ||||| Sbjct 1095583 GGAAAGCCCCTTGGAGCGATG-CGGGCACATCAGAGACCAAGTACCGTCAGCCTCGACCC 1095525 Query 245007 TCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGT 245066 ||| |||||| | ||| |||||||| | || | ||| || ||||||| | | | Sbjct 1095524 TCTTCATGAACAAGTCAGGGATCCACATAGCGTAGAATAGTTCCCTGGCGCGATTAATAT 1095465 Query 245067 CCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCA 245126 | || ||||||||| |||| || | || || || | ||| | ||||| ||||| | Sbjct 1095464 CTTTCCCGGTGTTCTTCTTCAGGTCGAGGAACTCCAAAATGTCCGCATGCCACGGCTCTA 1095405 Query 245127 TGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 ||| | ||| | || || || | ||||||||||||||| || || Sbjct 1095404 GGTAAATAGCAAACGCCCCAGGTCTCTTGTTGCCTCCCTGATCGAC 1095359 >seq160 Length=904994 Score = 129 bits (142), Expect = 1e-24 Identities = 298/443 (67%), Gaps = 6/443 (1%) Strand=Plus/Minus Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 ||||| ||||| || ||||| || || |||||||| ||| | | | || |||| | Sbjct 789245 GCCTTTTTCGCTGCTTCTGATGGTATTGTCAATGAAAACTTAGTCGAGAGATTCAGTCAG 789186 Query 42486 GAGGTGCAG-TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 ||||| ||| ||| || || |||||||| ||||| || || ||||| || |||||| | Sbjct 789185 GAGGTTCAGATACCA-GAAGCTCGCTGCTTTTACGGTTTTCAAATAGCTATGGAGAACAT 789127 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 |||||||| |||| | ||| | | || || || | ||| || || | Sbjct 789126 TCACTCTGAAATGTATAGTATTCTGATAGAAACCTATATACAGGACCCTACAGAAAAAGA 789067 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 ||||||| ||||| || |||||||| || | ||| |||||| | ||||| || Sbjct 789066 ATATTTGTTCAACGCCATCGAAACGATGCCTTGTGTAGCGAAAAAGGCGAATTGGGCCCT 789007 Query 42665 CAACTGGATCGAGAGTCCCGACGCA--ACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 ||| ||||| || ||| | || || |||| || | | ||||| || | || Sbjct 789006 CAATTGGATA-AGC-TCCAAAAGCTCCACTTTCGCTGAACGAATTGTAGCTTTCGCTGCA 788949 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 || || || || || ||||| || || || | || |||||| | ||| || | Sbjct 788948 GTTGAAGGGATATTTTTCTCTGGTAGTTTTGCAGCTATATTCTGGTTGAAGAAGCGTGGT 788889 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 | |||||| || | || ||||| || ||| | || |||||| || || ||||| | Sbjct 788888 TTGATGCCAGGTTTAACTTTCTCAAATGAATTGATTTCCAGGGATGAAGGTTTGCATTGT 788829 Query 42843 GACTTTGCCTGCCTCCTGTTCTC 42865 |||||||||||||| || ||||| Sbjct 788828 GACTTTGCCTGCCTTCTTTTCTC 788806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944051259173680