Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq170 98.7 8e-16 seq1536 89.7 4e-13 seq141 86.0 5e-12 seq736 82.4 6e-11 >seq170 Length=945555 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/100 (84%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 298955 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 298896 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || |||||| ||| ||| || ||||| Sbjct 298895 CCATAACTGATTTAATGAGCCTTTCTCGGTTTCACCTTAA 298856 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/100 (84%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 298955 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 298896 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || |||||| ||| ||| || ||||| Sbjct 298895 CCATAACTGATTTAATGAGCCTTTCTCGGTTTCACCTTAA 298856 >seq1536 Length=136833 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/100 (82%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || || |||||||| Sbjct 12558 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGAACTAAGGAA 12617 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| || | || || |||||| |||| ||| || ||||| Sbjct 12618 CCATAATTCATTTAATGAGCCTTTCGAGGTTTCACCTTAA 12657 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/100 (82%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || || |||||||| Sbjct 12558 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGAACTAAGGAA 12617 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| || | || || |||||| |||| ||| || ||||| Sbjct 12618 CCATAATTCATTTAATGAGCCTTTCGAGGTTTCACCTTAA 12657 >seq141 Length=994726 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 114343 CTCTAGAATTACCACG-TTATCCAAGT-AAC-TGAGTAAGATCTAAGGAACCAAAACTGA 114399 ||||||||||||||| |||||||||| ||| |||||| |||||||| ||||| | |||| Sbjct 570509 CTCTAGAATTACCACAATTATCCAAGTGAACGTGAGTACGATCTAAGAAACCATACCTGA 570568 Query 114400 TATATTGAGCCATTCGTGGTATCGTCTT 114427 | || ||||||||||| | | || |||| Sbjct 570569 TTTAATGAGCCATTCGCGATTTCATCTT 570596 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 115540 CTCTAGAATTACCACG-TTATCCAAGT-AAC-TGAGTAAGATCTAAGGAACCAAAACTGA 115596 ||||||||||||||| |||||||||| ||| |||||| |||||||| ||||| | |||| Sbjct 570509 CTCTAGAATTACCACAATTATCCAAGTGAACGTGAGTACGATCTAAGAAACCATACCTGA 570568 Query 115597 TATATTGAGCCATTCGTGGTATCGTCTT 115624 | || ||||||||||| | | || |||| Sbjct 570569 TTTAATGAGCCATTCGCGATTTCATCTT 570596 >seq736 Length=325069 Score = 82.4 bits (90), Expect = 6e-11 Identities = 76/93 (82%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||| ||| || | || || |||||||| Sbjct 50256 CATGTATTAGCTCTAGAATTACCACAGTTATCCAACTAAATGTGGGTATGAACTAAGGAA 50197 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 ||| |||| || || |||||| ||| ||| || Sbjct 50196 CCATAACTCATTTAATGAGCCTTTCACGGTTTC 50164 Score = 82.4 bits (90), Expect = 6e-11 Identities = 76/93 (82%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||| ||| || | || || |||||||| Sbjct 50256 CATGTATTAGCTCTAGAATTACCACAGTTATCCAACTAAATGTGGGTATGAACTAAGGAA 50197 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 ||| |||| || || |||||| ||| ||| || Sbjct 50196 CCATAACTCATTTAATGAGCCTTTCACGGTTTC 50164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396944357443186