Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq629 107 2e-18 seq1263 104 3e-17 seq534 104 3e-17 seq328 102 9e-17 seq141 102 9e-17 seq92 102 9e-17 seq649 100 3e-16 seq242 98.7 1e-15 seq203 98.7 1e-15 seq1603 96.9 4e-15 seq1029 96.9 4e-15 seq278 96.9 4e-15 seq57 96.9 4e-15 seq289 84.2 2e-11 >seq629 Length=374144 Score = 107 bits (118), Expect = 2e-18 Identities = 92/112 (82%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 56977 AACAACAAATTAACGTTTATGAAAAATT--TTCTCCTCGGCAAGAAATCGAACCCTGGTC 57034 || || ||||| |||||| ||||| |||||| |||| | |||||||||| |||| Sbjct 190709 AAGAAAAAATT---GTTTATTAAAAAAAAATTCTCCACGGCGGGGAATCGAACCCCGGTC 190653 Query 57035 TCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTGAATAT 57086 ||||||||||||||||| ||||| ||||||||||||||||||| | ||||| Sbjct 190652 TCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGACTTAATAT 190601 >seq1263 Length=216083 Score = 104 bits (114), Expect = 3e-17 Identities = 79/92 (86%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 63197 AAAAAATATCTCCACGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 63138 Query 57058 TCACCACTATACTACCGAGGATTGAATATATA 57089 | ||||||||||||||||||| || || |||| Sbjct 63137 TGACCACTATACTACCGAGGA-TGTATTTATA 63107 >seq534 Length=582160 Score = 104 bits (114), Expect = 3e-17 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 547436 AAAAAAATTCTCCACGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 547377 Query 57058 TCACCACTATACTACCGAGGAT 57079 | |||||||||||||||||||| Sbjct 547376 TGACCACTATACTACCGAGGAT 547355 >seq328 Length=661709 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || ||||| ||||||||||| | |||||||||| ||||||||||||||||||||| | Sbjct 118354 ATAAAAAAAATTCTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 118295 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| ||||||||||||||| ||| Sbjct 118294 TACTGACCACTATACTACCGGGGA 118271 Score = 100 bits (110), Expect = 3e-16 Identities = 80/96 (83%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||||||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 445623 AAAAAAAATCTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 445682 Query 57058 TCACCACTATACTACCGAGGATTGAATATATAACTT 57093 | ||||||||||||||| |||| |||| ||| || Sbjct 445683 TGACCACTATACTACCGGGGAT---ATATCTAATTT 445715 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 352759 AAAAAAAATCTCCACGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 352700 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 352699 TGACCACTATACTACCGAGGA 352679 >seq141 Length=994726 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || |||||| | ||||||||| | |||||||||| ||||||||||||||||||||| | Sbjct 327188 ATAAAAAATATACTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 327247 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| ||||||||||||||| ||| Sbjct 327248 TACTGACCACTATACTACCGGGGA 327271 >seq92 Length=1270183 Score = 102 bits (112), Expect = 9e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 673823 AAAAAAATACTCCACGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 673882 Query 57058 TCACCACTATACTACCGAGGATTGAATATATAACTTGAA 57096 | ||||||||||||||||||| | ||| | || ||||| Sbjct 673883 TGACCACTATACTACCGAGGACTTAATGTCTATGTTGAA 673921 >seq649 Length=884455 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 517186 TCTCCACGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 517245 Query 57066 ATACTACCGAGGATT 57080 ||||||||||||||| Sbjct 517246 ATACTACCGAGGATT 517260 >seq242 Length=734329 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 488191 TCTCCACGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 488132 Query 57066 ATACTACCGAGGAT 57079 |||||||||||||| Sbjct 488131 ATACTACCGAGGAT 488118 >seq203 Length=1434037 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || ||||||| ||||||| || | ||||||||| ||||||||||||||||||||| | Sbjct 426025 ATTAAAAATTATCTCCTCTGCGGGGAATCGAACCTCGGTCTCCCGCGTGACAGGCGGGGA 426084 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| |||||||||||||||| || Sbjct 426085 TACTGACCACTATACTACCGATGA 426108 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || ||||||| ||||||| || |||||||||| ||||||||||||||||||||| | Sbjct 426321 ATTAAAAATTATCTCCTCTGCGGAGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 426380 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| |||||||||||||||| || Sbjct 426381 TACTGACCACTATACTACCGATGA 426404 >seq1603 Length=133004 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||||||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 109755 AAAAAAAATCTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 109814 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||| ||| Sbjct 109815 TGACCACTATACTACCGGGGA 109835 >seq1029 Length=311713 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||||||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 41803 AAAAAAAATCTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 41744 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||| ||| Sbjct 41743 TGACCACTATACTACCGGGGA 41723 >seq278 Length=1775425 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||||||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1449679 AAAAAAAATCTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1449738 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||| ||| Sbjct 1449739 TGACCACTATACTACCGGGGA 1449759 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 ||||||||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1456356 CTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1456297 Query 57067 TACTACCGAGGA 57078 |||||||| ||| Sbjct 1456296 TACTACCGGGGA 1456285 >seq57 Length=4625438 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||||||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 2690105 AAAAAAAATCTCCTCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2690046 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||| ||| Sbjct 2690045 TGACCACTATACTACCGGGGA 2690025 >seq289 Length=716807 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 |||||||||| | |||||||||| |||||||| ||||||||||| ||||| | |||| Sbjct 30120 TCTCCTCGGCGGGGAATCGAACCCCAGTCTCCCGTGTGACAGGCGGGTATACTGATCACT 30179 Query 57066 ATACTACCGAGGA-TTGA 57082 ||||||||| ||| |||| Sbjct 30180 ATACTACCGGGGACTTGA 30197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543047167627120