Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq318 86.0 6e-12 seq253 84.2 2e-11 >seq318 Length=663677 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||||||||| ||||||| | ||| || | ||||| || || || || Sbjct 605656 GTGGATTCTTTTTGAATGTTATAATCTGACAAGGTTCGGCCATCTTCCAGTTGTTTTCCA 605597 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | | || ||||| || ||||||||||| || ||||| | | || ||||| Sbjct 605596 GCAAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTATCTTGGA-TCTTGGCTTT 605538 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || ||| | || || || | || | || || || |||| || Sbjct 605537 AACATTCTCGATGGTGTCAGATGGTTCAACCTCAAGGGTGATAGTTTTACCAGTCAGCGT 605478 Query 64426 TTTTACGAAAATTTGCATT 64444 ||| || || || |||||| Sbjct 605477 TTTCACAAAGATCTGCATT 605459 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||| |||||||| ||||| | | ||| | | ||||| || || Sbjct 605890 TGAAGTGTAGATTCTTTCTGAATGTTATAATCAGACAAGGTTCTGCCATCTTCCAGTTGT 605831 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || | || | | || ||||| || ||||||||||| || || || ||||| Sbjct 605830 TTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGAATTTTG 605771 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 |||||| ||| | || || | |||||||| | || | |||||| || || Sbjct 605770 GCTTTTACATTCTCGATGGTGTCGGATGGTTCCACTTCCAAGGTAATGGTCTTTCCAGTT 605711 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | |||||| || || || ||||| Sbjct 605710 AGAGTTTTGACAAAGATCTGCAT 605688 >seq253 Length=804807 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||| | || || |||| || ||||| ||||| || ||||| || | Sbjct 281367 ACCTCCCCTCAATCGCAATACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGA 281426 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | || || || ||| |||| | ||||| || || || || Sbjct 281427 CAAAGTACGTCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGG 281486 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || | ||| || || ||| ||| || | ||||| | || || Sbjct 281487 AATTCCCTCCTTGTTTTGAATCTTAGCCTTAACATTTTCGATGGTATCCGAAGGTTCGAC 281546 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || ||||||||||| || || || ||||| || Sbjct 281547 CTCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCATCTT 281597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499492452054920