Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq74 208 8e-49 >seq74 Length=1577532 Score = 208 bits (230), Expect = 8e-49 Identities = 889/1381 (64%), Gaps = 59/1381 (4%) Strand=Plus/Plus Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 || ||||| | |||||| || ||||| | | || ||| || |||| |||| | | || Sbjct 1095227 ATTTCAAAGTCCGCGGGAGGGATCGGCGTGAACGTGCACAACATACGAGCCAAGAGCACC 1095286 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 | || | | | | | | ||||| || ||||||||| | || |||| |||||| Sbjct 1095287 GAGATTGACAGGATC---GCAAAATCCAATGGGCTCGTCCCTCTACTGAGGGTGTTCAAC 1095343 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || ||||| | ||||| || ||||| || | ||| || | || || | || Sbjct 1095344 AATACGGCGAGGTACGTCGATCAGGGAGGCAACAAGAGACCTGGGGCGTTTGCTATTTAC 1095403 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| ||||| |||||| | || ||| |||||||| |||||| ||| || Sbjct 1095404 CTAGAGCCGTGGCATGCGGACATTTTGGAGTTCCTCGACCTGAAGAAGAACACCGGGAAA 1095463 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 ||| | | | ||||| || || ||||||||| | ||| | || ||| | || ||||| Sbjct 1095464 GATATTAATCGCGCCAGGGAACTATTCTACGCTATGTGGATCCCTGACTTGTTCATGAAG 1095523 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | |||||| || | ||| ||| | || || || | || || ||| Sbjct 1095524 AGGGTCGAGGCTGACGGTACTTGGTCTCTGATGTGCCCGCATCGCTCCAAGGGGCTTTCC 1095583 Query 94372 GACGTTTGTGGATCGCGT--TTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAG- 94428 || || ||| || | ||||| | | |||| || ||||| | | |||||| Sbjct 1095584 GA--TTGCTGGGGCGAGGAGTTTGAGAAGCTCTATGAACGCTACGAGGCTGAAGGCAAGT 1095641 Query 94429 --GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGAC-GTA---CAG 94482 | |||| || ||| | || | | ||||| | ||| || ||| ||| Sbjct 1095642 TCGTCAGGCAG-TTACCG--GCACGTGACGTGTGGAAAGCCATC----ACTGTATCCCAG 1095694 Query 94483 GTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAAC--GCCAAGTCCAACC 94540 || ||||| ||||| || ||||| | | ||||||| || |||| | |||| |||| Sbjct 1095695 GTAGAGACTGGTACTCCATACATGCTCTACAAGGACGCTTGCAACAGGAAAAGT--AACC 1095752 Query 94541 AGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTT 94600 ||||| | || || |||||||||| || ||||||| |||||| |||||||||| | Sbjct 1095753 AGCAGAATCTTGGCACGATCAAGAGCAGCAACTTGTGCACGGAGATTATCGAGTATACCT 1095812 Query 94601 CTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAG 94660 | || || ||| | |||||||| ||| ||| ||||||| ||||| || | || | Sbjct 1095813 CCCCCGATGAGGTCGCTGTGTGCAACTTGGCCTCCATCG--CTGTCAACAT--GTTTGTA 1095868 Query 94661 ATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGA-ACTTCGCGGGAAGG 94719 | ||| ||| | | | |||| | || || ||| || | | | |||| Sbjct 1095869 AAGCCCGATCGT-----GAGACATACGATTTCCAGAAG-TTGAGAGAAATAACT--AAGG 1095920 Query 94720 ATGGTCTT---GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCG 94776 ||||| |||| || ||| |||||||| ||||| ||||||| | || |||||| Sbjct 1095921 -TGGTCGCCAGGAACTTGGACAAAATAATCGACGTGAACTACTACCCCATACCCGAGGCG 1095979 Query 94777 GAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCG 94836 | || || ||| || ||||||||||| ||||| ||||||| || ||||||||| Sbjct 1095980 AGGCTGTCGAATATGAGACACCGGCCCATCGGAATCGGGATCCAGGGGTTAGCGGACGCG 1096039 Query 94837 CTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATA 94896 | | | ||||| |||||| ||| | | ||||| ||||||| | | ||| Sbjct 1096040 TTCATCCTCATGCGCATGCCCTTCGATAGCGAACAGGCGGCACTTTTGAATAAGCAAATA 1096099 Query 94897 TTCGAAAGCATTTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGG 94955 ||||||| | | || |||| |||| | || | | | ||| | | ||| ||||| Sbjct 1096100 TTCGAAACCCTCTACTACGCGGCCCTGGAGGCGAGTTGCGAACTAGCCGAGA-AAGACGG 1096158 Query 94956 CGGGCCACACGAATCGTTCCGCGGA-TCGCCCTTGGAA--CAGGGCATTTTTCAGTTCGA 95012 | | | ||| | || | | | || || | || || || |||| ||| Sbjct 1096159 C------CCTTATTCGACCTACGAAGGCAGTCCTGTAAGCAAAGGTATCTTGCAGTACGA 1096212 Query 95013 CCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTAT 95072 | | ||||| || | || | | ||| | |||||| ||| | | | | Sbjct 1096213 CATGTGGGGCGTTACTCCGACAGATCTCTGGGACTGGTCTGCTTTGAAGGAGAAAATCGC 1096272 Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 ||| || || || || | || | | || |||||||| || || || || ||||| Sbjct 1096273 CAAGCATGGGGTACGCAATTCCTTGTTACTCGCTCCCATGCCTACTGCGTCTACTGCGCA 1096332 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 ||||| |||||||||||||| |||| || | |||||| || | |||| |||| |||| Sbjct 1096333 AATCCTGGGCAACAACGAGTCCATCGAGCCTTACACCTCGAATATCTACACCAGGAGGGT 1096392 Query 95193 GCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGG 95252 || | ||||| |||| || ||||| | ||||| | || || ||| | Sbjct 1096393 CCTTTCTGGGGAGTTCCAGGTTGTCAACCAACACCTGATCAATGATCTAACGGATGCCTC 1096452 Query 95253 TGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAA---CGGCTCCGTCCAGAA 95309 |||||| || | | ||||||||| | || |||||| ||| || |||| || Sbjct 1096453 CTTGTGGGACGATACCATGAAGAACCAAGTCCT---CGCCAACTTCGGGTCTATCCAAAA 1096509 Query 95310 CATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCA 95369 |||||| || ||||| || |||| || | |||||||||||||||||||| |||| Sbjct 1096510 CATCCCCGGCATTCCGGATAACCTCAAAGCTATTTACAAGACCGTGTGGGAGATTTCGCA 1096569 Query 95370 G 95370 | Sbjct 1096570 G 1096570 Score = 206 bits (228), Expect = 3e-48 Identities = 985/1547 (64%), Gaps = 61/1547 (4%) Strand=Plus/Plus Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 || ||||| | |||||| || ||||| | | || ||| || |||| |||| | | || Sbjct 1091896 ATTTCAAAGTCCGCGGGAGGGATCGGCGTGAACGTGCACAACATACGAGCCAAGAGCACC 1091955 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 | || | | | | | | ||||| || ||||||||| | || |||| |||||| Sbjct 1091956 GAGATTGACAGGATC---GCAAAATCCAATGGGCTCGTCCCTCTACTGAGGGTGTTCAAC 1092012 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || ||||| | ||||| || ||||| || | ||| || | || || | || Sbjct 1092013 AATACGGCGAGGTACGTCGATCAGGGAGGCAACAAGAGACCTGGGGCGTTTGCTATTTAC 1092072 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| ||||| |||||| | || ||| |||||||| |||||| ||| || Sbjct 1092073 CTAGAGCCGTGGCATGCGGACATTTTGGAGTTCCTCGACCTGAAGAAGAACACCGGGAAA 1092132 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 ||| | | | ||||| || || ||||||||| | ||| | || ||| | || ||||| Sbjct 1092133 GATATTAATCGCGCCAGGGAACTATTCTACGCTATGTGGATCCCTGACTTGTTCATGAAG 1092192 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | |||||| || | ||| ||| | || || || | || || ||| Sbjct 1092193 AGGGTCGAGGCTGACGGTACTTGGTCTCTGATGTGCCCGCATCGCTCCAAGGGGCTTTCC 1092252 Query 94372 GACGTTTG-TGGATCGCGT--TTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAG 94428 |||| ||| || | ||||| | | |||| || ||||| | | |||||| Sbjct 1092253 A---TTTGCTGGGGCGAGGAGTTTGAGAAGCTCTATGAACGCTACGAGGCTGAAGGCAAG 1092309 Query 94429 ---GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGAC-GTA---CA 94481 | |||| || ||| | || | | ||||| | ||| || ||| || Sbjct 1092310 TTCGTCAGGCAG-TTACCG--GCACGTGACGTGTGGAAAGCCATC----ACTGTATCCCA 1092362 Query 94482 GGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAAC--GCCAAGTCCAAC 94539 ||| ||||| ||||| || ||||| | | |||||| || |||| | |||| ||| Sbjct 1092363 GGTAGAGACTGGTACTCCTTACATGCTCTACAAGGATGCTTGCAACAGGAAAAGT--AAC 1092420 Query 94540 CAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACT 94599 |||||| | || || |||||||||| || ||||||| |||||| |||||||||| Sbjct 1092421 CAGCAGAATCTTGGCACGATCAAGAGCAGCAACTTGTGCACGGAGATTATCGAGTATACC 1092480 Query 94600 TCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA 94659 || || || ||| | |||||||| ||| ||| ||||||| ||||| || | || | Sbjct 1092481 TCCCCCGATGAGGTCGCTGTGTGCAACTTGGCCTCCATCG--CTGTCAACAT--GTTTGT 1092536 Query 94660 GATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGA-ACTTCGCGGGAAG 94718 | ||| ||| | | | |||| | || || ||| || | | | ||| Sbjct 1092537 AAAGCCCGATCGT-----GAGACATACGATTTCCAGAAG-TTGAGAGAAATAACT--AAG 1092588 Query 94719 GATGGTCTT---GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGC 94775 | ||||| |||| || ||| |||||||| ||||| ||||||| | || ||||| Sbjct 1092589 G-TGGTCGCCAGGAACTTGGACAAAATAATCGACGTGAACTACTACCCCATACCCGAGGC 1092647 Query 94776 GGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGC 94835 | | || || ||| || ||||||||||| ||||| ||||||| || |||||||| Sbjct 1092648 GAGGCTGTCGAATATGAGACACCGGCCCATCGGAATCGGGATCCAGGGGTTAGCGGACGC 1092707 Query 94836 GCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACAT 94895 | | | | ||||| |||||| ||| | | ||||| ||||||| | | || Sbjct 1092708 GTTCATCCTCATGCGCATGCCCTTCGATAGCGAACAGGCGGCACTTTTGAATAAGCAAAT 1092767 Query 94896 ATTCGAAAGCATTTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACG 94954 ||||||| | | || |||| |||| | || | | | ||| | | ||| |||| Sbjct 1092768 CTTCGAAACCCTCTACTACGCGGCCCTGGAGGCGAGTTGCGAACTAGCCGAGA-AAGACG 1092826 Query 94955 GCGGGCCACACGAATCGTTCCGCGGA-TCGCCCTTGGAA--CAGGGCATTTTTCAGTTCG 95011 || | | ||| | || | | | || || | || || || |||| || Sbjct 1092827 GC------CCTTATTCGACCTACGAAGGCAGTCCTGTAAGCAAAGGTATCTTGCAGTACG 1092880 Query 95012 ACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTA 95071 || | ||||| || | || | | ||| | |||||| ||| | | | | Sbjct 1092881 ACATGTGGGGCGTTACTCCGACAGATCTCTGGGACTGGTCTGCTTTGAAGGAGAAAATCG 1092940 Query 95072 TCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGC 95131 ||| || || || || | || | | || |||||||| || || || || |||| Sbjct 1092941 CCAAGCATGGGGTACGCAATTCCTTGTTACTCGCTCCCATGCCTACTGCGTCTACTGCGC 1093000 Query 95132 AGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGG 95191 | ||||| |||||||||||||| |||| || | |||||| || | |||| |||| ||| Sbjct 1093001 AAATCCTGGGCAACAACGAGTCCATCGAGCCTTACACCTCGAATATCTACACCAGGAGGG 1093060 Query 95192 TGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGG 95251 | || | ||||| |||| || ||||| | ||||| | || || ||| | Sbjct 1093061 TCCTTTCTGGGGAGTTCCAGGTTGTCAACCAACACCTGATCAATGATCTAACGGATGCCT 1093120 Query 95252 GTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAA---CGGCTCCGTCCAGA 95308 |||||| || | | ||||||||| | || |||||| ||| || |||| | Sbjct 1093121 CCTTGTGGGACGATACCATGAAGAACCAAGTCCT---CGCCAACTTCGGGTCTATCCAAA 1093177 Query 95309 ACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGC 95368 ||||||| || ||||| || |||| || | |||||||||||||||||||| ||| Sbjct 1093178 ACATCCCCGGCATTCCGGATAACCTCAAAGCTATTTACAAGACCGTGTGGGAGATTTCGC 1093237 Query 95369 AGCGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNN 95428 || || || || || ||||| | | ||| |||||||| ||||| Sbjct 1093238 AGAAGGTTATTATCAACATGGCGGCGGATAGAGGGGCCTTCATCGATCAGAGCCAGAGCT 1093297 Query 95429 NNNNNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGT 95488 |||| | | | |||| | | || ||| ||||| |||| Sbjct 1093298 TGAATATCCATATGGAGAAAGCTACGTACGGAGCGCTGTCTTCGATGCACTTCTATGGGT 1093357 Query 95489 GGAGAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCA 95535 ||| ||||||||||||||| || ||||| || ||| |||||| |||| Sbjct 1093358 GGAAAAAGGGTCTCAAGACTGGGATGTACTACTTGAGAACCAAGCCA 1093404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494572352712280