Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq318 140 2e-28 seq253 113 3e-20 >seq318 Length=663677 Score = 140 bits (154), Expect = 2e-28 Identities = 160/213 (75%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCT 15024 ||| || ||||| ||||| ||||| || ||||| ||||| || || |||| | ||| Sbjct 605897 AACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCA--GACAAGGTTCTGCCATCT 605840 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | |||||| |||||| | ||||| | |||||||| ||||||||||||||||| Sbjct 605839 TCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTGTCC 605780 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||||| ||||||| | || || || ||| ||| || || ||||||||||| Sbjct 605779 TGAATTTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCCACTTCCAAGGTAATGGTC 605720 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||| ||||| || |||||| Sbjct 605719 TTTCCAGTTAGAGTTTTGACAAAGATCTGCATA 605687 Score = 109 bits (120), Expect = 4e-19 Identities = 161/225 (72%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||| || || || || || |||||||| ||||| ||||| ||| || ||| | ||| Sbjct 605669 AACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATC--TGACAAGGTTCGGCCATCT 605612 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | |||||| ||||| | ||||| | |||||||| |||||||||||||| || Sbjct 605611 TCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTATCT 605552 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| ||| ||| | || || || || ||| || || | ||| || ||| Sbjct 605551 TGGATCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCAACCTCAAGGGTGATAGTT 605492 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAAT 15189 ||||| ||||| ||||| ||||| || ||||| | ||||| |||| Sbjct 605491 TTACCAGTCAGCGTTTTCACAAAGATCTGCAT-TCTGAAACAAAT 605448 >seq253 Length=804807 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || | ||||| || || | ||||| ||||| || |||||||| ||||| || Sbjct 281368 CCTCCCCTCAATCGCAATACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGAC 281427 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| |||||||| ||||| | || ||||||||||| || |||| Sbjct 281428 AAAGTACGTCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 281487 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| ||||||| ||| || || ||| |||| || ||||| | ||| || Sbjct 281488 ATTCCCTCCTTGTTTTGAATCTTAGCCTTAACATTTTCGATGGTATCCGAAGGTTCGACC 281547 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| ||||| |||| |||||| ||||| || ||||| || Sbjct 281548 TCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCATCTT 281597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357285751044005