Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq74 165 1e-35 seq304 89.7 8e-13 >seq74 Length=1577532 Score = 165 bits (182), Expect = 1e-35 Identities = 416/622 (67%), Gaps = 24/622 (4%) Strand=Plus/Minus Query 203838 TCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 |||| || || || |||||||| | || | || ||| || |||||| |||||||| | Sbjct 1093438 TCTTATCAACAGTAAACTGAATCGGCTTGGCAGCTGGCTTGGTTCTCAAGTAGTACATCC 1093379 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTC---ACGT 203954 | ||||| || ||||| | |||||| || | |||||| |||||||| |||| |||| Sbjct 1093378 CAGTCTTGAGACCCTTTTTCCACCCATAGAAGTGCATCGAAGACAGC--GCTCCGTACGT 1093321 Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTG 204014 | || |||| || || |||| |||||| || |||||||| | | | | ||| | Sbjct 1093320 AGCTTTCT-CCATATGGATATTCAAGCTCTGGCTCTGATCGATGAAGGCCCCTCTATCCG 1093262 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | ||||| |||||||| ||||||||||||||||||||| |||||| | | || || Sbjct 1093261 CCGCCATGTTGATAATAACCTTCTGCGAAATCTCCCACACGGTCTTGTAAATAGCTTTGA 1093202 Query 204075 TGTGTTGAGGCACATCTTCC---CACGTCCT-GATCGAGCCGTTGTCGGCCATCA---GT 204127 || | || | | || | || | ||| || ||| || ||| | | | Sbjct 1093201 GGTTATCCGGAA----TGCCGGGGATGTTTTGGATAGACCCGAAGTTGGCGAGGACTTGG 1093146 Query 204128 CTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGG 204187 || || | || || |||| | | | || || | || || | |||||| || Sbjct 1093145 TTCTTCATGGTATCGTCCCACAAGGAG-GCATCC--GTTAGATCATTGATCAGGTGTTGG 1093089 Query 204188 TTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGT 204247 |||| | ||| || || || || || |||| | |||| | | || |||| | || Sbjct 1093088 TTGACAACCTGGAACTCCCCAGAAAGGACCCTCCTGGTGTAGATATTCGAGGTGTAAGGC 1093029 Query 204248 TCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGG 204307 |||| | |||||||||||| | || || || || || || ||||||||||| || Sbjct 1093028 TCGATGGACTCGTTGTTGCCCAGGATTTGCGCAGTAGACGCAGTAGGCATGGGAGCGAGT 1092969 Query 204308 AGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGC 204367 | || ||| ||||| || || | || || | ||||| || | |||||| | Sbjct 1092968 AACAAGGAATTGCGTACCCCATGCTTGGCGATTTTCTCCTTCAAAGCAGACCAGTC--CC 1092911 Query 204368 ATCGCACTG--GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGC 204425 | | ||| || | ||||||||||||||| |||| ||||| |||| || || || | Sbjct 1092910 AGAGATCTGTCGGAGTAACGCCCCACATGTCGTACTGCAAGATACCTTTGCTTACAGGAC 1092851 Query 204426 TGCCCTTGTACGTCGGATAAGG 204447 |||| | ||| |||| |||||| Sbjct 1092850 TGCCTTCGTAGGTCGAATAAGG 1092829 Score = 98.7 bits (108), Expect = 2e-15 Identities = 186/272 (68%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 204178 CAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTT 204237 |||||| |||||| | ||| || || || || || |||| | |||| | | || Sbjct 1096429 CAGGTGTTGGTTGACAACCTGGAACTCCCCAGAAAGGACCCTCCTGGTGTAGATATTCGA 1096370 Query 204238 GGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCAT 204297 |||| | || |||| | |||||||||||| | || || || || || || ||||| Sbjct 1096369 GGTGTAAGGCTCGATGGACTCGTTGTTGCCCAGGATTTGCGCAGTAGACGCAGTAGGCAT 1096310 Query 204298 GGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGT 204357 |||||| || | || ||| ||||| || || | || || | ||||| || | Sbjct 1096309 GGGAGCGAGTAACAAGGAATTGCGTACCCCATGCTTGGCGATTTTCTCCTTCAAAGCAGA 1096250 Query 204358 CCAGTCGTGCATCGCACTG--GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGA 204415 |||||| || | ||| || | ||||||||||||||| |||| ||||| |||| Sbjct 1096249 CCAGTCC--CAGAGATCTGTCGGAGTAACGCCCCACATGTCGTACTGCAAGATACCTTTG 1096192 Query 204416 CTGACTGGGCTGCCCTTGTACGTCGGATAAGG 204447 || || || ||||| | ||| |||| |||||| Sbjct 1096191 CTTACAGGACTGCCTTCGTAGGTCGAATAAGG 1096160 >seq304 Length=657134 Score = 89.7 bits (98), Expect = 8e-13 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 203849 GTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGG 203908 ||||| ||||| | || | || ||| || |||||| |||||| | | ||||| || Sbjct 342463 GTGAATTGAATCGGCTTGGCAGCTGGCTTGGTTCTCAAGTAGTACGTCCAAGTCTTGAGA 342404 Query 203909 CCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTC---ACGTTGGGGTCGGCC 203965 |||||| |||||| | | |||||| |||| || |||| |||| | || || Sbjct 342403 GCCTTCTTCCACCCAAAGAAGTGCATCGAAGTGAGC--GCTCCGAACGTGGATTTCT-CC 342347 Query 203966 ATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTG 204025 || || || |||| ||| || || || ||||||| | | ||| || ||||| ||| Sbjct 342346 ATATGTATATTCAAGCTCTGACTCTGATCTATGAAAGCCCCATTATCCGCCGCCATGTTG 342287 Query 204026 ATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | ||| ||||||||||||||||||| |||||| Sbjct 342286 AGAATAACAGTCTGCGAAATCTCCCACACGGTCTTG 342251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794912747240080