Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq792 127 5e-24 seq318 114 3e-20 seq253 114 3e-20 seq199 96.9 8e-15 seq805 91.5 3e-13 >seq792 Length=424820 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| || ||||| || |||||||| || | |||||||| | | ||| | || Sbjct 97141 TCTGAGGACGAGATGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGAAAGAGTTCGACC 97082 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| ||||| ||||| |||||||| | | ||||| || || || ||||| Sbjct 97081 ATCTTCGAGCTGTTTTCCAGCGAAGATCAATCTTTGCTGATCTGGGGGGATCCCTTCCTT 97022 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||| ||| ||||| |||||| | | ||| || || | ||||| Sbjct 97021 GTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCAGAGGGTTCGACCTCGAGGGTGAT 96962 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||||||| ||||| || |||||||| Sbjct 96961 GGTCTTACCCGTGAGTGTTTTAACGAAAATTTG 96929 >seq318 Length=663677 Score = 114 bits (126), Expect = 3e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || || || || | ||| || |||| ||| || || |||||| Sbjct 605899 AGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAGACAAGGTTCTGCCATCT 605840 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| || ||||| |||||||| | | || ||||| || ||||||||| ||| Sbjct 605839 TCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTGTCC 605780 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| || || || |||| |||||| | || ||| || ||||| || || || Sbjct 605779 TGAAT-TTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCCACTTCCAAGGTAATGGT 605721 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || |||||||| ||||| || || Sbjct 605720 CTTTCCAGTTAGAGTTTTGACAAAGATCTG 605691 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || || || ||||| | ||| || || | ||| || | |||||| Sbjct 605671 AGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTGACAAGGTTCGGCCATCT 605612 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| || ||||| || ||||| | | || ||||| || ||||||||| || Sbjct 605611 TCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTATCT 605552 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || |||| |||||| | || ||| || || | ||||| || Sbjct 605551 TGGATCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCAACCTCAAGGGTGATAGTT 605492 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||||||||| || || Sbjct 605491 TTACCAGTCAGCGTTTTCACAAAGATCTG 605463 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || || || || | ||| || || | ||| || | ||||||||||| || Sbjct 606346 TGAAGCGTAGATTCTTTCTGAATGTTATAATCTGACAAGGTTCGGCCATCTTCCAGTTGT 606287 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| |||||||| | | || ||||| || ||| || ||| || || || ||| Sbjct 606286 TTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCTTGGAT-TTT 606228 Query 199547 TGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || |||||| |||| |||||| | || ||| || ||||| || || ||||| || || Sbjct 606227 AGCTTTCACGTTCTCGATGGTGTCGGATGGTTCAACTTCCAAGGTAATTGTCTTTCCAGT 606168 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 |||||||| ||||| || || Sbjct 606167 TAGAGTTTTGACAAAGATCTG 606147 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || || || || | ||| || || | || || | |||||| Sbjct 606127 AGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGATAAGGTTCGGCCATCT 606068 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| || ||||| || ||||| | | || ||||| || ||| || ||| || Sbjct 606067 TCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCT 606008 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || |||||| |||| |||||| | || ||| || || ||||| || || Sbjct 606007 TGGAT-TTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGT 605949 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | |||||| ||||| || || Sbjct 605948 CTTTCCAGTTAAAGTTTTGACAAAGATCTG 605919 >seq253 Length=804807 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 |||||||| ||||| || |||||||| | |||||||| | |||||| | |||||||||| Sbjct 281386 ACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGACAAAGTACGTCCATCTTCC 281445 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | || || || || || || | |||||| || || || |||||| || | ||| Sbjct 281446 AATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATTCCCTCCTTGTTTTGA 281505 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||| || ||||| ||| || | | ||| || || | ||||| |||||| Sbjct 281506 ATCTTAGCCTTAACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTTA 281565 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || | |||||| ||||| || || Sbjct 281566 CCAGTCAAAGTTTTAACAAAGATCTG 281591 >seq199 Length=980398 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 |||||||| ||||| || |||||||| | |||||||| | |||||| | |||||||||| Sbjct 850392 ACAAGGTGAAGAGTGGATTCCTTTTGTATATTGTAGTCCGACAAAGTACGTCCATCTTCC 850333 Query 199481 AGCTGCTTTCCGGCGAAGATG--------AGACGCTGCTGGTCCGGAAAAATTCCTTCTC 199532 | || || || || || ||| | || ||| ||||| || |||||| || Sbjct 850332 AATTGTTTACCAGCAAAAATGCAAAAATTAAACACTGTTGGTCTGGTGGAATTCCCTCCT 850273 Query 199533 GCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || |||||||| ||| || ||||| | | || | | | | || || | |||| Sbjct 850272 TGTCTTGAATCTTAGCCTTAACATTTTCGATGATATCCGAAGATCCGACCTCAAGAGTGA 850213 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | |||||||| || | |||||| ||||| || || Sbjct 850212 TGGTCTTACCAGTCAAAGTTTTAACAAAGATCTG 850179 >seq805 Length=567825 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 |||||| || || || | || | ||| || | | ||| || | ||||||||||| || Sbjct 473793 GTGGAGTGTGGATTCTCTCTGAATGTTATAAGCTGACAAGGTTCGGCCATCTTCCAGTTG 473734 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||||| |||||||| | | || ||||| || ||| || ||| || || || || Sbjct 473733 TTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGCGGAATGCCCTCTTTGTCTTGGAT-TT 473675 Query 199546 TTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | || |||||| |||| |||||| | || ||| || || ||||| || ||||| || | Sbjct 473674 TAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGTCTTTCCAG 473615 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 | |||||| ||||| ||||| Sbjct 473614 TTGAAGTTTTGACAAATATTTG 473593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178553145369331