Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq160 228 8e-55 seq318 109 5e-19 >seq160 Length=904994 Score = 228 bits (252), Expect = 8e-55 Identities = 429/627 (68%), Gaps = 8/627 (1%) Strand=Plus/Plus Query 132871 TGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAA 132930 || || ||||| ||| | | ||| |||||||| |||||||| || || ||||||||| Sbjct 788794 TGAACTAAATGAGAGAAAAGAAGGCAGGCAAAGTCACAATGCAAACCTTCATCCCTGGAA 788853 Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990 || | ||| || |||||| || || ||||| | || || || || | ||| ||||| Sbjct 788854 ATCAATTCATTTGAGAAAGTTAAACCTGGCATCAAACCACGCTTCTTCAACCAGAATATA 788913 Query 132991 GCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCG 133050 || || ||||| || || || || | || || || || |||||||| || | || || Sbjct 788914 GCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCAGCGAAAGCTACAATTCGTTCA 788973 Query 133051 CCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCC-ATTCGGCCTTTTCTTTGAC 133109 |||| |||| |||| | ||||| || |||| ||||| | ||||| | || Sbjct 788974 GCGAAAGTGGAGCTTTTGGAGCTTATCCAATTGAGGGCCCAATTCGCCTTTTTCGCT-AC 789032 Query 133110 GCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTA 133169 || |||||||||||||||||||| |||||| ||| ||| | | | | || Sbjct 789033 ACAAGGCATCGTTTCGATGGCGTTGAACAAATATTCTTTTTCTGTAGGGTCCTGTATATA 789092 Query 133170 GGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCC 133229 ||| || || || | ||||||||| ||||| | ||||||||| || |||||||| || Sbjct 789093 GGTTTCTATCAGAATACTATACATTTCAGAGTGAATGTTCTCCATAGCTATTTGAAAACC 789152 Query 133230 GTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTC 133289 ||||||||| || || || | ||| || || ||| ||| | |||||| | ||||| Sbjct 789153 GTAAAAGCAGCGAGCTTCTGGTATCTGAACCTCCTGACTGAATCTCTCGACTAAGTTTTC 789212 Query 133290 GTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTC 133349 ||||| || || || || ||||||||||| | || ||| |||||||| | || Sbjct 789213 ATTGACAATACCATCAGAAGCAGCGAAAAAGGCTAAAACATGCGAAATGAAATGTCTTTC 789272 Query 133350 GTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGAC 133406 ||| || || | || ||| | || ||| |||||||| || ||||| Sbjct 789273 ---GTCCTTAGAGAGATTCTTCCATTGCTTCGAGTCTCGAGACAGGTCAACTTCCTCAGT 789329 Query 133407 GGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGG 133466 ||||| || || || || |||| ||| ||| | |||| || || || || || || Sbjct 789330 TGTCCAGAAGGAAGCTTCTGCTTCTTTATACTTTGTCCATATATCTTTGTACTGAATAGG 789389 Query 133467 AAAAATCACAAACCGGCGGGGGTTTTC 133493 ||| | |||||||| | || ||||| Sbjct 789390 AAATACTACAAACCGTCCAGGATTTTC 789416 >seq318 Length=663677 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || || || || || ||| | || || || | || Sbjct 606144 ATGCAGATCTTTGTCAAAACTCTAACTGGAAAGACAATTACCTTGGAAGTTGAACCATCC 606203 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| ||||||| ||||||||||| |||||| | ||||| Sbjct 606204 GACACCATCGAGAACG-TGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACCA 606262 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | ||| || ||||| ||||| || | || ||| | || || || Sbjct 606263 ACAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGATTATAA 606322 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || || ||| | ||||| |||||||| || ||| | ||||| ||| Sbjct 606323 CATTCAGAAAGAATCTACGCTTCATTTGGTTCTTCGTCTCAGAGGAGGC 606371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500020291061120