Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq74 127 2e-24 seq160 93.3 5e-14 seq304 89.7 6e-13 >seq74 Length=1577532 Score = 127 bits (140), Expect = 2e-24 Identities = 250/360 (69%), Gaps = 10/360 (3%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 ||||| || ||||| ||||| ||||| |||||| || ||||| | ||| || Sbjct 1095852 GCGATGGAGGCCAAGTTGCACACAGCGACCTCATCGGGGGAGGTATACTCGATAATCTCC 1095793 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || ||||||||| ||||| ||||| || | ||||| |||||||| || ||||||| Sbjct 1095792 GTGCACAAGTTGCTGCTCTTGATCGTGCCAAGATTCTGCTGGTTACTTTTCCTGTTGCAA 1095733 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAG-AATTGCCTT 106641 || ||||||||||||||||| || || || ||||| ||| || | || || || || Sbjct 1095732 GCGTCCTTGTAGAGCATGTATGGAGTACCAGTCTCTACCTGGGA-TACAGTGATGGCTTT 1095674 Query 106642 CCACACATCGGCGGCTGGTACAATGGC-GTTGGCCCGTCCCTCCGCCTCGTACTTTGTGT 106700 |||||| || || |||| | || | | | | || || |||||||| | | Sbjct 1095673 CCACACGTCACGTGCCGGTA-ACTGCCTGACGAACTTGCCTTCAGCCTCGTAGCGTTCAT 1095615 Query 106701 AGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACC--TGGTGCCTTGTCTGGAC 106757 |||| ||||||||||| ||| | || ||||| || || ||| || || || | Sbjct 1095614 AGAGCTTCTCAAACTCCTCGCCC-CAGCAATCGGAAAGCCCCTTGGAGCGATG--CGGGC 1095558 Query 106758 AGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 106817 | | |||||||| ||| | |||| |||| ||||||||| | ||| || ||||||| Sbjct 1095557 ACATCAGAGACCAAGTACCGTCAGCCTCGACCCTCTTCATGAACAAGTCAGGGATCCACA 1095498 Score = 122 bits (134), Expect = 1e-22 Identities = 249/360 (69%), Gaps = 10/360 (3%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 ||||| || ||||| ||||| ||||| |||||| || ||||| | ||| || Sbjct 1092521 GCGATGGAGGCCAAGTTGCACACAGCGACCTCATCGGGGGAGGTATACTCGATAATCTCC 1092462 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || ||||||||| ||||| ||||| || | ||||| |||||||| || ||||||| Sbjct 1092461 GTGCACAAGTTGCTGCTCTTGATCGTGCCAAGATTCTGCTGGTTACTTTTCCTGTTGCAA 1092402 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAG-AATTGCCTT 106641 |||||||||||||||||||| || || || ||||| ||| || | || || || || Sbjct 1092401 GCATCCTTGTAGAGCATGTAAGGAGTACCAGTCTCTACCTGGGA-TACAGTGATGGCTTT 1092343 Query 106642 CCACACATCGGCGGCTGGTACAATGGC-GTTGGCCCGTCCCTCCGCCTCGTACTTTGTGT 106700 |||||| || || |||| | || | | | | || || |||||||| | | Sbjct 1092342 CCACACGTCACGTGCCGGTA-ACTGCCTGACGAACTTGCCTTCAGCCTCGTAGCGTTCAT 1092284 Query 106701 AGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACC--TGGTGCCTTGTCTGGAC 106757 |||| ||||||||||| ||| | || ||| || || ||| || || || | Sbjct 1092283 AGAGCTTCTCAAACTCCTCGCCC-CAGCAAATGGAAAGCCCCTTGGAGCGATG--CGGGC 1092227 Query 106758 AGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 106817 | | |||||||| ||| | |||| |||| ||||||||| | ||| || ||||||| Sbjct 1092226 ACATCAGAGACCAAGTACCGTCAGCCTCGACCCTCTTCATGAACAAGTCAGGGATCCACA 1092167 >seq160 Length=904994 Score = 93.3 bits (102), Expect = 5e-14 Identities = 178/256 (70%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || || | ||| ||||| | |||||| | |||||||||||| || || Sbjct 788820 GGCAAAGTCACAATGCAAACCTTCATCCCTGGAAATCAATTCATTTGAGAAAGTTAAACC 788879 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 117391 |||||| | ||| |||||||||||||| | ||||| ||| || | || ||||| || | Sbjct 788880 TGGCATCAAACCACGCTTCTTCAACCAGAATATAGCTGCAAAACTA-CCAGAGAAAAATA 788938 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTT-GTGTCA 117450 | || || || || || || | || || || ||||| | | ||| ||| | | Sbjct 788939 TCCCTTCAACTGCAGCGAAAGCTACAATTCGTTCAGCGAAAGTG-GAGCTTTTGGAGCTT 788997 Query 117451 AACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCA 117510 | ||| || | ||||| |||||||| ||| | | ||| || | |||| |||||| | Sbjct 788998 ATCCAATTGAGGGCCCAATTCGCCTTTTTCGCTACACAAGGCATCGTTTCGATGGCGTTG 789057 Query 117511 AATAACTGCTTCTTTT 117526 || || | ||||||| Sbjct 789058 AACAAAT-ATTCTTTT 789072 >seq304 Length=657134 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 ||||| || ||||| ||||| | ||| |||||| || ||||| | ||| || Sbjct 341566 GCGATGGAGGCCAAGTTGCATATAGCGACCTCATCGAGCGAGGTATACTCGATAATCTCC 341507 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || ||||||||| || || ||| | | | ||||| |||||||| ||| ||||||| Sbjct 341506 GTGCACAAGTTGCTGCTTTTGATCATGCTAAGATTCTGCTGGTTACTTTTTCTGTTGCAA 341447 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 || ||||||||||| ||||| | || ||||||| |||| || Sbjct 341446 GCGTCCTTGTAGAGTATGTATAGAGTGTTCGTCTCCATCTGGGA 341403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589800907479320