Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq792 165 2e-35 seq318 161 2e-34 seq805 152 1e-31 seq253 141 2e-28 seq199 127 5e-24 seq515 89.7 1e-12 seq12025 87.8 4e-12 seq1515 86.0 1e-11 >seq792 Length=424820 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || ||||||||||| |||| |||||||| ||||||||| Sbjct 97134 ACGAGATGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGAAAGAGTTCGACCATCTTCG 97075 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || |||||||| | || ||| || ||||| || || ||||| |||||||| Sbjct 97074 AGCTGTTTTCCAGCGAAGATCAATCTTTGCTGATCTGGGGGGATCCCTTCCTTGTCTTGG 97015 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| || ||| || || ||||| | ||||| Sbjct 97014 ATCTTAGCCTTGACGTTTTCGATGGTGTCAGAGGGTTCGACCTCGAGGGTGATGGTCTTA 96955 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | |||||| Sbjct 96954 CCCGTGAGTGTTTTAACGAAAATTTGCAT 96926 >seq318 Length=663677 Score = 161 bits (178), Expect = 2e-34 Identities = 164/211 (78%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | |||||| || || ||||| ||||| || ||||| | |||| ||||| ||||||| Sbjct 605897 AACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAGACAAG-GTTCTGCCATCTT 605839 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | || || || || |||||||| | || |||||||||||| ||||| ||||| ||||| | Sbjct 605838 CCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTGTCCT 605779 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 ||||||| || || ||||| |||||||| || ||||||||| | ||||| |||| Sbjct 605778 GAATTTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCCACTTCCAAGGTAATGGTCT 605719 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || | |||||| || || | ||||| Sbjct 605718 TTCCAGTTAGAGTTTTGACAAAGATCTGCAT 605688 Score = 161 bits (178), Expect = 2e-34 Identities = 171/223 (77%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 |||||| | | ||| | ||||| || || ||||| ||||| || ||||| | |||| | Sbjct 606365 TCTGAGACGAAGAACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCTGACAAG-G 606307 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 ||| |||||||| || || || || |||||||| | || |||||||||||| ||||||| Sbjct 606306 TTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATGC 606247 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 | ||||||||||| ||||| || |||||||| |||||||| || ||| ||||| | Sbjct 606246 CCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCGGATGGTTCAACTTCCA 606187 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| |||||||| || | |||||| || || | ||||| Sbjct 606186 AGGTAATTGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 606144 Score = 150 bits (166), Expect = 4e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || || ||||| ||||| || ||||| | | |||| |||||||| Sbjct 606125 AACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGATAAGGTTCGGCCATCTTC 606066 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || || || ||||| | || |||||||||||| |||||||| ||||||||||| Sbjct 606065 CAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCTTG 606006 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| || |||||||| |||||||| || ||| ||||| | || | ||||| Sbjct 606005 GATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGTCTT 605946 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || |||||||| || || | |||||| Sbjct 605945 TCCAGTTAAAGTTTTGACAAAGATCTGCATT 605915 Score = 136 bits (150), Expect = 9e-27 Identities = 159/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | ||| || ||||| ||||||||||| || ||||| | |||| |||| ||||||| Sbjct 605669 AACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTGACAAG-GTTCGGCCATCTT 605611 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | || || || || || ||||| | || |||||||||||| ||||| ||||| || |||| Sbjct 605610 CCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTATCTT 605551 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | || || || || ||||| |||||||| || ||| || |||||||| | || | Sbjct 605550 GGATCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCAACCTCAAGGGTGATAGTTT 605491 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || |||| ||||| || || | |||||| Sbjct 605490 TACCAGTCAGCGTTTTCACAAAGATCTGCATT 605459 >seq805 Length=567825 Score = 152 bits (168), Expect = 1e-31 Identities = 163/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATC 194987 ||||| | ||| || ||||| ||| | ||||| || ||| | | |||| |||| ||||| Sbjct 473801 AAAACCAAGTGGAGTGTGGATTCTCTCTGAATGTTATAAGCTGACAAG-GTTCGGCCATC 473743 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| || || || || |||||||| | || |||||||||||| |||||||| |||||||| Sbjct 473742 TTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGCGGAATGCCCTCTTTGTC 473683 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| ||||| || |||||||| |||||||| || ||| ||||| | || | || Sbjct 473682 TTGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGT 473623 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||||| || || | |||||| Sbjct 473622 CTTTCCAGTTGAAGTTTTGACAAATATTTGCAT 473590 >seq253 Length=804807 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 || ||| |||||||||||||| || || ||||| |||||||| || | | ||| | || Sbjct 281379 TCGCAATACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGACAAAGTACGTCC 281438 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| | || ||||| || || || | || ||||| ||||| ||||| || || || Sbjct 281439 ATCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATTCCCTCCTT 281498 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 || |||||| || ||| || || || ||||| |||||| ||| || ||||| || | Sbjct 281499 GTTTTGAATCTTAGCCTTAACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTGAT 281558 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||||||||| || || | ||||| Sbjct 281559 GGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCAT 281594 >seq199 Length=980398 Score = 127 bits (140), Expect = 5e-24 Identities = 163/224 (73%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 || ||| ||||||||||||||||| || ||||| |||||||| || | | ||| | || Sbjct 850399 TCGCAATACAAGGTGAAGAGTGGATTCCTTTTGTATATTGTAGTCCGACAAAGTACGTCC 850340 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGAT-----AAGT---CGTTGTTGGTCTGGAGGAATG 195036 |||||| | || ||||| || || || || | | ||||||||||| ||||| Sbjct 850339 ATCTTCCAATTGTTTACCAGCAAAAATGCAAAAATTAAACACTGTTGGTCTGGTGGAATT 850280 Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 || || ||||||||||| || ||| || || || ||| | |||||| | | || ||| Sbjct 850279 CCCTCCTTGTCTTGAATCTTAGCCTTAACATTTTCGATGATATCCGAAGATCCGACCTCA 850220 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || ||||||||||| || || | ||||| Sbjct 850219 AGAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCAT 850176 >seq515 Length=573432 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 || ||| |||| |||||||||||| || ||||| |||||||| || | | ||| | || Sbjct 557440 TCGCAATACAATGTGAAGAGTGGATTCGTTTTGTATATTGTAGTCCGACAAAGTACGTCC 557499 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 | |||| | || ||||| || || || | ||||| || ||||| ||||| || || | Sbjct 557500 AGCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCCTCCCT 557559 Query 195045 GTCTTGAAT 195053 ||||||||| Sbjct 557560 GTCTTGAAT 557568 >seq12025 Length=7061 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||| || || | || ||||| ||||| ||||| | || ||||||||||| || ||| Sbjct 4364 TGCAAAAATTAAACGCTGTTGATCTGGTGGAATTCTCTCCTTGTCTTGAATCTTAGCCTT 4305 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || || || ||||| |||||| ||| || ||||| || | ||||| || |||||||| Sbjct 4304 AACATTTTCGATGGTATCCGAAAGTTCGACCTCAAGAGTGATGGTCTTACCAGTCAAAGT 4245 Query 195123 TTTTACGAACACTTGCAT 195140 ||| || || | ||||| Sbjct 4244 TTTAACAAAGATCTGCAT 4227 >seq1515 Length=152415 Score = 86.0 bits (94), Expect = 1e-11 Identities = 97/128 (76%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| |||| |||||||||||| || ||||| |||||||| || | | ||| | ||||| Sbjct 16439 CAATACAATGTGAAGAGTGGATTCATTTTGTATATTGTAGTCCGACAAAGTACGTCCATC 16498 Query 194988 TTCGAGCTGCTTACCTGCGAAGA--TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 ||| | || ||||| || || | ||| ||||| || ||||| ||||| |||| || Sbjct 16499 TTCCAATTGTTTACCAGCAAAAACTTAA--CGTTGCTGATCTGGTGGAATTTCTTCCCTG 16556 Query 195046 TCTTGAAT 195053 |||||||| Sbjct 16557 TCTTGAAT 16564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109134847821431