Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq318 122 6e-23 seq792 113 3e-20 seq805 105 4e-18 seq253 82.4 5e-11 >seq318 Length=663677 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| |||||||||||||||||| || || | | |||| |||| || Sbjct 606125 AACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGATAAGGTTCGGCCATCTTC 606066 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||| |||||||| ||||| || | || ||| |||||| | || | ||||| ||||| Sbjct 606065 CAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCTTG 606006 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 || || ||| ||| | || | ||| | ||||| || | |||||||| || Sbjct 606005 GATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGTCTT 605946 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | ||| || |||||||||||||| Sbjct 605945 TCCAGTTAAAGTTTTGACAAAGATCTGCAT 605916 Score = 116 bits (128), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | |||| |||||| ||||||||||| || || | | |||| |||| || Sbjct 605669 AACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTGACAAGGTTCGGCCATCTTC 605610 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||| |||||||| ||||| || | || ||| |||||| | || | || ||||| || Sbjct 605609 CAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTATCTTG 605550 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||| || || || || | ||| | ||||| || | ||| || ||| Sbjct 605549 GATCTTGGCTTTAAC--ATTCTCGATGGTGTCAGATGGTTCAACCTCAAGGGTGATAGTT 605492 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || || ||||||||||||||||| Sbjct 605491 TTACCAGTCAGCGTTTTCACAAAGATCTGCAT 605460 Score = 113 bits (124), Expect = 3e-20 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| |||||||||||||||||| || || | | ||| |||| || Sbjct 605897 AACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAGACAAGGTTCTGCCATCTTC 605838 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||| |||||||| || || || | || ||| |||||| | || | || |||||||| Sbjct 605837 CAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTG 605778 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| || ||| || || || || | || | || || || | ||| ||||| Sbjct 605777 AATTTTGGCTTTTAC--ATTCTCGATGGTGTCGGATGGTTCCACTTCCAAGGTAATGGTC 605720 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || ||||| || ||||||||||||||| Sbjct 605719 TTTCCAGTTAGAGTTTTGACAAAGATCTGCATA 605687 Score = 107 bits (118), Expect = 1e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 34746 CAATCATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTA 34805 |||| || ||||| || | | | |||||| |||| || |||||||||||||||| Sbjct 606379 CAATATTTGCCTCCTCTGAGACGAAGAACCAAATGAAGCGTAGATTCTTTCTGAATGTTA 606320 Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 || || || | | |||| |||| ||||| |||||||| || || || | || ||| ||| Sbjct 606319 TAATCTGACAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGG 606260 Query 34866 TCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCG 34925 ||| | || | ||||| ||||| || || ||| ||| | || | || Sbjct 606259 TCTGGGGGAATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCGGAT 606200 Query 34926 GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || | ||| || || ||||| || ||||| || ||||||||||||||| Sbjct 606199 GGTTCAACTTCCAAGGTAATTGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCATA 606143 >seq792 Length=424820 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| || | || | || | ||| || |||||||| || ||||| ||| Sbjct 97152 CCTCCCCTCAATCTGAGGACGAGATGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGAA 97093 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || |||| |||| || ||||||||||| || || || | || |||||| ||| | || Sbjct 97092 AGAGTTCGACCATCTTCGAGCTGTTTTCCAGCGAAGATCAATCTTTGCTGATCTGGGGGG 97033 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||| |||||||| ||||| |||||| | | || | ||| || || || Sbjct 97032 ATCCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCAGAGGGTTCGACC 96973 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||| ||||| || |||||||| || || || || || ||||| Sbjct 96972 TCGAGGGTGATGGTCTTACCCGTGAGTGTTTTAACGAAAATTTGCAT 96926 >seq805 Length=567825 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 ||||||||||| | |||| |||| ||||||||||||| | || | | |||| |||| Sbjct 473801 AAAACCAAGTGGAGTGTGGATTCTCTCTGAATGTTATAAGCTGACAAGGTTCGGCCATCT 473742 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 ||||| |||||||| || || || | || ||| |||||| |||| | ||||| ||||| Sbjct 473741 TCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGCGGAATGCCCTCTTTGTCT 473682 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 || || ||| ||| | || | ||| | ||||| || | |||||||| Sbjct 473681 TGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGTC 473622 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || ||| || ||||| || |||||| Sbjct 473621 TTTCCAGTTGAAGTTTTGACAAATATTTGCATA 473589 >seq253 Length=804807 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | ||| || | ||||| || ||| || || || || |||||||| Sbjct 281368 CCTCCCCTCAATCGCAATACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGAC 281427 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | ||| |||| |||| ||||| || ||||| |||| || || || ||| | || Sbjct 281428 AAAGTACGTCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 281487 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTC 34930 | |||||||||| |||||| || || || | ||||| | ||| | || Sbjct 281488 ATTCCCTCCTTGTTTTGAATCTTAGCCTTAAC--AT--TTTCGATGGTATCCGAAGGTTC 281543 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || | || ||||| || || || | ||| || |||||||||||||| || Sbjct 281544 GACCTCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCATCTT 281597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324537089778504