Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq643 104 3e-17 >seq643 Length=490110 Score = 104 bits (114), Expect = 3e-17 Identities = 218/316 (69%), Gaps = 17/316 (5%) Strand=Plus/Plus Query 104985 GAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCTGGAGCTCAAT 105044 || |||||||||||||||| || || ||||| ||||||||||||||| ||||||| | | Sbjct 176655 GAGAAGAAGGTGATTTAGGTCCGATATATGGTTTTCAATGGAGACATTTTGGAGCTGAGT 176714 Query 105045 ATATCGACTGTG-ATACCGACTATACCGGCCAAGGTATAGACCAATTAAGTCAAGTTATA 105103 | | | | || || | ||||||| |||| || ||||| ||| ||| || ||| Sbjct 176715 ACAAAG-GTATGCATGCAGACTATAAAAATAAAGGAATTGACCAGTTAGCTCATGTAATA 176773 Query 105104 GAAACTATAAAAAATAACCCCGGGTG-TCGAAGAATAATTATAGATAGTTGGAATGTGTC 105162 | ||||| ||||| || || || | || | || || || || | ||| | Sbjct 176774 AATACTAT-AAAAACAAGACCTAATGATAGACGCATCATAAT-----GTGTGCATGGAAC 176827 Query 105163 ACAATT-AT----CAGATATGGCTCTTCCACCGTGTCATTGTTTGGTACAATTTTACATT 105217 | ||| || |||| ||||| | || || || ||||||||||| || |||| | Sbjct 176828 CCTATTGATATCCCAGAAATGGCATTACCTCCTTGCCATTGTTTGGTCCAGTTTTTTGTA 176887 Query 105218 AGAAATAAAATTTATTTAGATTGTCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGT 105277 ||||| || | || | |||||| | |||||| ||||||||||| | ||| | || Sbjct 176888 GGAAAT--GATGAACTTTCA-TGTCAACTTTATCAACGATCTGCAGATATGGGACTTGGA 176944 Query 105278 GTACCATATAATATTG 105293 || || | |||||||| Sbjct 176945 GTGCCTTTTAATATTG 176960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658202444634280