Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq160 289 3e-73 >seq160 Length=904994 Score = 289 bits (320), Expect = 3e-73 Identities = 528/761 (69%), Gaps = 18/761 (2%) Strand=Plus/Plus Query 18793 CTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTA 18852 ||||| || ||| | | ||||||||| ||| || |||||||||||| ||||| | Sbjct 788650 CTATCAGCAACATACTCAATATATGTACACATTGCATTACAATTCATTCCGATTAAACTG 788709 Query 18853 ACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGAT 18912 ||||| || || || || |||||||||||||| || || || || || | || ||| Sbjct 788710 ACAGGCAGAGCTTCAGTTAGAAATTCTTGTTCGATTTTAACAGCATCACAAATGATATTC 788769 Query 18913 ACAACTCTATCTTCATTAGGAGGGTATA-GAAG---ATGTTTAAACATCAAACATGCAAA 18968 | || ||| || || ||| | ||| ||| || | | || ||||| Sbjct 788770 GTGA---TACGTTC-TTGCGACGGTTTCTGAACTAAATGAGAGAAAAGAAGGCAGGCAAA 788825 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||||||| | || || || || ||||||||||| || || |||||||| ||||| Sbjct 788826 GTCACAATGCAAACCTTCATCCCTGGAAATCAATTCATTTGAGAAAGTTAAACCTGGCAT 788885 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 || || | || || ||||||||||||| ||||| ||||| || ||||| ||||| Sbjct 788886 CAAACCACGCTTCTTCAACCAGAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTC 788945 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTA-TGAATCCATT 19147 ||||| || ||||| || | || ||| | || | | | | || | ||||| | Sbjct 788946 AACTGCAGCGAAAGCTACAATTCGTTCAGCGAAAGT-GGAGCTTTTGGAGCTTATCCAAT 789004 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 | || ||||||| ||||| || |||||| ||||| || || || | || || | || Sbjct 789005 TGAGGGCCCAATTCGCCTTTTTCGCTACACAAGGCATCGTTTCGATGGCGTTGAACAAAT 789064 Query 19208 ACATACGCTCATCTGTA---TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264 || | | |||||| || | | ||| | ||||||| | ||| |||||||| | Sbjct 789065 --ATTC-TTTTTCTGTAGGGTCCTGTATATAGGTTTCTATCAGAATACTATACATTTCAG 789121 Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 | ||||| || || ||||| || ||||| |||||||| || | ||||||| |||||| | Sbjct 789122 AGTGAATGTTCTCCATAGCTATTTGAAAACCGTAAAAGCAGCGAGCTTCTGGTATCTGAA 789181 Query 19325 CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384 | || || ||||| ||||| || |||||||| || || |||||| ||| || |||| Sbjct 789182 CCTCCTGACTGAATCTCTCGACTAAGTTTTCATTGACAATACCATCAGAAGCAGCGAAAA 789241 Query 19385 ATGCTAATACATGTTTAATAAAATGTTTTTCAT-CTGAGGTTAATGTATTCCAATCATTA 19443 | ||||| ||||| ||| |||||| |||| | || || || | ||||| | || Sbjct 789242 AGGCTAAAACATGCGAAATGAAATGTCTTTCGTCCTTAGAGAGAT-TCTTCCATTGCTTC 789300 Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503 ||| ||| | || ||||| ||| |||||| || ||||| ||||||| ||||||| Sbjct 789301 GAGTCTCGAGACAGGTCAACTTCCTCAGTTGTCCAGAAGGAAGCTTCTGCTTCTTTATAC 789360 Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | |||||||||| || || |||||||||| ||||| Sbjct 789361 TTTGTCCATATATCTTTGTACTGAATAGGAAATACTACAAA 789401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561937406000520