Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq160 289 3e-73 seq1059 102 1e-16 >seq160 Length=904994 Score = 289 bits (320), Expect = 3e-73 Identities = 527/769 (69%), Gaps = 8/769 (1%) Strand=Plus/Plus Query 36995 TTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTAT 37054 ||||||||| | |||||| |||||| | || || ||| |||||||| | | | || || Sbjct 788637 TTCCTTCAGCAACCTATCAGCAACATACTCAATATATGTACACATTGCATTACAATTCAT 788696 Query 37055 ACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATC 37114 || |||| | || || | || || |||||| || ||| ||| | |||||||| Sbjct 788697 TCCGATTAAACTGACAGGCAGAGCTTCAGTTAGAAATTCTTGTTCGATTTTAACAGCATC 788756 Query 37115 TTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAA---ACAA 37171 || ||||| ||| ||||| | || | | | || || | | | || Sbjct 788757 ACAAATGATATTCGTGATACGTTCTTGCGACGG----TTTCTGAACTAAATGAGAGAAAA 788812 Query 37172 TAAA-CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGG 37230 || || ||||| |||||||| ||||||||||| || ||||||||||| || || | Sbjct 788813 GAAGGCAGGCAAAGTCACAATGCAAACCTTCATCCCTGGAAATCAATTCATTTGAGAAAG 788872 Query 37231 TTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAA 37290 |||| |||||||| ||||| | || || | ||| ||||| ||||||||| ||||| | Sbjct 788873 TTAAACCTGGCATCAAACCACGCTTCTTCAACCAGAATATAGCTGCAAAACTACCAGAGA 788932 Query 37291 AGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAAT 37350 | || || ||||||||||| || || ||||||| ||| | ||||||| || || | Sbjct 788933 AAAATATCCCTTCAACTGCAGCGAAAGCTACAATTCGTTCAGCGAAAGTGGAGCTTTTGG 788992 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 ||||| || | ||||| |||||| ||||| || ||||| || | Sbjct 788993 AGCTTATCCAATTGAGGGCCCAATTCGCCTTTTTCGCTACACAAGGCATCGTTTCGATGG 789052 Query 37411 CTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTAT 37470 | || || | | | | ||||||| | || |||||| || || || || | ||||| Sbjct 789053 CGTTGAACAAATATTCTTTTTCTGTAGGGTCCTGTATATAGGTTTCTATCAGAATACTAT 789112 Query 37471 ACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAG 37530 |||||||||||||||| || || |||||||| |||||||| ||||| || | |||||| | Sbjct 789113 ACATTTCAGAGTGAATGTTCTCCATAGCTATTTGAAAACCGTAAAAGCAGCGAGCTTCTG 789172 Query 37531 ATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590 || ||||| || | | || |||| ||||||||||||| || || |||||| || Sbjct 789173 GTATCTGAACCTCCTGACTGAATCTCTCGACTAAGTTTTCATTGACAATACCATCAGAAG 789232 Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCC 37650 | || || || || | ||||| || ||||||||||| || || || | || |||| Sbjct 789233 CAGCGAAAAAGGCTAAAACATGCGAAATGAAATGTCTTTCGTCCTTAGAGAGATTCTTCC 789292 Query 37651 AATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCAC 37710 | | || ||| || | |||||||| ||| ||||| || || ||| Sbjct 789293 ATTGCTTCGAGTCTCGAGACAGGTCAACTTCCTCAGTTGTCCAGAAGGAAGCTTCTGCTT 789352 Query 37711 GTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 ||||||| | ||||| ||||| || | || || ||||||| |||||| Sbjct 789353 CTTTATACTTTGTCCATATATCTTTGTACTGAATAGGAAATACTACAAA 789401 >seq1059 Length=259062 Score = 102 bits (112), Expect = 1e-16 Identities = 331/500 (66%), Gaps = 22/500 (4%) Strand=Plus/Minus Query 142398 TTTTAAA-ATATCCAAATGATATGTATATACCAGGTAAAAGAAAATGGATAAAGATAAAA 142456 ||| ||| ||||||||| || | || ||| |||||||| | ||| | || | ||| Sbjct 145648 TTTGAAAGATATCCAAAGCATTT--ATGAACCTGGTAAAAGGCACTGGTTGAAAGTGAAA 145591 Query 142457 AGGGATTACTTAAACGATGGTGCAATGGCAGATTCAGCAGATTTAGTCGTATTGGGTGCA 142516 | |||||| | || |||||||||||||||| |||||||| | || | || || Sbjct 145590 AAGGATTATCTTTTCGGTGGTGCAATGGCAGATAGTGCAGATTTGATGGTCCTCGGAGCT 145531 Query 142517 TATTATGGTAAAGGTAAAAGATATGGAGGGATAATGTCTATATTTCTTATGGGTTGTT-- 142574 | ||||||| || |||| | |||||||| ||||| | ||||||||||| |||| Sbjct 145530 TGGTATGGTACTGGCAAAA---AAGGAGGGATGATGTCCGTTTTTCTTATGGGCTGTTTC 145474 Query 142575 -ATGATGAAGATACAAATACATGGAAAACTGTTAC-AAAATGTTCAGGATTCA--ATGAT 142630 || |||| ||| || ||||| || ||| || || ||| | ||| Sbjct 145473 AATCCTGAAAGCGGAAA---ATTTTGTACTGTAACTAAAGTGCACACTGGTCATGACGAT 145417 Query 142631 GAAACATTAAAGGAATTACAG--TCAA-TTGATATGATAAAAATCAGTAAAAATAAAGAT 142687 ||||| | | || | ||| | || |||| ||| | ||||||||| || | | Sbjct 145416 AAAACACTGGAAAAACTGCAGGATGAACTTGACATGGTGAAAATCAGTCAAGACAGTTCC 145357 Query 142688 AAAATACCAACATGGTTAAATATTAACAGTATACATTA-TCCAGATTTTATTGTTAATAA 142746 ||| | || | ||||| | | ||| | ||| | ||| |||||| ||| | Sbjct 145356 AAAGTTCCGAATTGGTT-GAGCTGTACAAAAACCATGATTCCCGATTTTGTTGCACGGGA 145298 Query 142747 TCCAAAAACATCACCTGTTTGGGAAATATCCGGATATGAATTTACAAAATCACCATCT-C 142805 ||| || | | || |||||||| ||| | ||| |||||||| | || || | | Sbjct 145297 TCCCAAGAAACAGCCAGTTTGGGAGATAACAGGAGCAGAATTTAC-TCAGCATGATGTAC 145239 Query 142806 ATACAGCAGATGGGATATCTATTAGATTTCCTAGATGTAAAAATATAAGAAATGATAAAG 142865 |||| |||||||| || ||||| |||||||| || | || |||||| |||||||| Sbjct 145238 ATACTGCAGATGGAATTTCTATCAGATTTCCGAGGGTGACAAGGATAAGAGATGATAAAA 145179 Query 142866 ATTGGTTATCTGCAACAAAT 142885 | ||| | | || |||||| Sbjct 145178 ACTGGGAAACGGCTACAAAT 145159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592136195203720