Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq253 161 8e-35 seq318 145 6e-30 seq805 123 2e-23 seq199 122 7e-23 seq12025 96.9 3e-15 seq515 87.8 1e-12 seq1515 84.2 2e-11 >seq253 Length=804807 Score = 161 bits (178), Expect = 8e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || || || || || | ||||| |||||||| |||||||||||||| || | Sbjct 281368 CCTCCCCTCAATCGCAATACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGAC 281427 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||| ||||| ||||| || |||||||||||||| || ||| Sbjct 281428 AAAGTACGTCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 281487 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || | |||||| || || ||| |||| | || || || | ||| || Sbjct 281488 ATTCCCTCCTTGTTTTGAATCTTAGCCTTAACATTTTCGATGGTATCCGAAGGTTCGACC 281547 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || || || |||||||| ||||| |||||||| Sbjct 281548 TCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCAT 281594 >seq318 Length=663677 Score = 145 bits (160), Expect = 6e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 || |||||||| | ||| | ||| |||||||| ||||||||||| || || || ||||| Sbjct 606373 TTGCCTCCTCTGAGACGAAGAACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCT 606314 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | |||| | |||| |||| ||| || || || || ||||| | ||||| || || Sbjct 606313 GACAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGG 606254 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 |||||||| ||||| ||||| ||||| ||| || | || | ||||| || | ||| Sbjct 606253 GGAATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCGGATGGTTCA 606194 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || | || || || |||| |||||| ||||| |||||||| Sbjct 606193 ACTTCCAAGGTAATTGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 606144 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| | ||| || ||||| ||||||||||| || || || ||||| | Sbjct 605916 TTCCACCACGGAGACGGAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAG 605857 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| |||| |||| ||| || || || || ||||| | ||||| || || | Sbjct 605856 ACAAGGTTCTGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGG 605797 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || || |||||||| ||||||| | || | ||||| || | ||||| Sbjct 605796 GAATTCCTTCCTTGTCCTGAATTTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCCA 605737 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | || | || || || |||| |||||| ||||| |||||||| Sbjct 605736 CTTCCAAGGTAATGGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 605688 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || ||||| ||||||||||| || || || ||||| | | |||| | | Sbjct 606131 ACGAAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGATAAGGTTCGGCC 606072 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| ||| || || ||||| ||||| | ||||| || || |||||||| ||||| Sbjct 606071 ATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTT 606012 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| ||| || | || | |||||||| | ||| ||||| | || | Sbjct 606011 GTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTAT 605952 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||||||||| ||||| |||||||| Sbjct 605951 GGTCTTTCCAGTTAAAGTTTTGACAAAGATCTGCAT 605916 Score = 138 bits (152), Expect = 9e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || || || || ||||||||||| || || ||||| | | |||| | | Sbjct 605675 ACGAAGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTGACAAGGTTCGGCC 605616 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| ||| || || ||||| ||||| | ||||| || || ||||| ||||| || Sbjct 605615 ATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTT 605556 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||| || || ||| ||| | || | |||||||| | ||| || ||||| |||| Sbjct 605555 ATCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCAACCTCAAGGGTGAT 605496 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || | ||||| ||||| |||||||| Sbjct 605495 AGTTTTACCAGTCAGCGTTTTCACAAAGATCTGCAT 605460 >seq805 Length=567825 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| ||||| || || || || |||||| | || || || ||| | | | |||| | | Sbjct 473805 ACGAAAAACCAAGTGGAGTGTGGATTCTCTCTGAATGTTATAAGCTGACAAGGTTCGGCC 473746 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| ||| || || || || ||||| | ||||| || ||||||||||| ||||| Sbjct 473745 ATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGCGGAATGCCCTCTTT 473686 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| ||| || | || | |||||||| | ||| ||||| | || | Sbjct 473685 GTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTAT 473626 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||| ||||||| |||||||| ||||| Sbjct 473625 GGTCTTTCCAGTTGAAGTTTTGACAAATATTTGCAT 473590 >seq199 Length=980398 Score = 122 bits (134), Expect = 7e-23 Identities = 153/211 (73%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || ||||| |||||||||||||| || | | ||| | |||| |||||||| Sbjct 850386 TGAAGAGTGGATTCCTTTTGTATATTGTAGTCCGACAAAGTACGTCCATCTTCCAATTGT 850327 Query 101327 TTACC--------TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTT 101378 ||||| |||||| || |||| |||||| || || ||||| || || || |||| Sbjct 850326 TTACCAGCAAAAATGCAAAAATTAAACACTGTTGGTCTGGTGGAATTCCCTCCTTGTCTT 850267 Query 101379 GAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTT 101438 |||| || || ||| |||| | | || || | | | || |||||||||| || | Sbjct 850266 GAATCTTAGCCTTAACATTTTCGATGATATCCGAAGATCCGACCTCAAGAGTGATGGTCT 850207 Query 101439 TGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || |||||||| ||||| |||||||| Sbjct 850206 TACCAGTCAAAGTTTTAACAAAGATCTGCAT 850176 >seq12025 Length=7061 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 |||||| || |||||||||||||| || ||||| | || || |||||||| || || Sbjct 4364 TGCAAAAATTAAACGCTGTTGATCTGGTGGAATTCTCTCCTTGTCTTGAATCTTAGCCTT 4305 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 ||| |||| | || || || ||| || |||||||||| || || || || ||||| Sbjct 4304 AACATTTTCGATGGTATCCGAAAGTTCGACCTCAAGAGTGATGGTCTTACCAGTCAAAGT 4245 Query 101452 TTTTACAAATATCTGCAT 101469 ||| ||||| |||||||| Sbjct 4244 TTTAACAAAGATCTGCAT 4227 >seq515 Length=573432 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || ||||| |||||||||||||| || | | ||| | || | |||||||| Sbjct 557453 TGAAGAGTGGATTCGTTTTGTATATTGTAGTCCGACAAAGTACGTCCAGCTTCCAATTGT 557512 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382 ||||| ||||| || ||||| || ||||| || ||||| || || | |||||||| Sbjct 557513 TTACCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCCTCCCTGTCTTGAAT 557568 >seq1515 Length=152415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || ||||| |||||||||||||| || | | ||| | |||| |||||||| Sbjct 16449 TGAAGAGTGGATTCATTTTGTATATTGTAGTCCGACAAAGTACGTCCATCTTCCAATTGT 16508 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382 ||||| ||||| | |||| || ||||| || ||||| |||| | |||||||| Sbjct 16509 TTACCAGCAAAAACTTAACGTTGCTGATCTGGTGGAATTTCTTCCCTGTCTTGAAT 16564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396160590518301