Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq318 120 3e-22 seq805 95.1 1e-14 seq253 95.1 1e-14 >seq318 Length=663677 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| |||| || || ||||||||| ||| |||||| || Sbjct 605688 ATGCAGATCTTTGTCAAAACTCTAACTGGAAAGACCATTACCTTGGAAGTGGAACCATCC 605747 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || ||||| || ||| | ||| ||| || Sbjct 605748 GACACCATCGAGAATGTAAAAGCCAAAATTCAG-GACAAGGAAGGAATTCCCCCAGACCA 605806 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | ||||| || || |||||| |||||||| | ||| || | |||||||| Sbjct 605807 ACAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCAGAACCTTGTCTGATTATAA 605866 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||| ||||||||||| || ||| |||| Sbjct 605867 CATTCAGAAAGAATCTACACTTCACTTGGT 605896 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| ||||| ||||| || || ||||| || ||| ||||| || Sbjct 605915 AATGCAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACGTTAGAAGTTGAACCATC 605974 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | || |||||| ||||||||||| | ||| ||| || Sbjct 605975 TGACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACCA 606034 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | |||||||| || |||||| |||||||| ||| | | |||||||| Sbjct 606035 ACAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTATCAGATTATAA 606094 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||| ||||||||||| || ||| |||| Sbjct 606095 CATTCAGAAAGAATCTACACTTCACTTGGT 606124 Score = 102 bits (112), Expect = 7e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 28544 TTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAAC 28603 |||| | | |||||| || ||||| ||||| | || |||||||| || ||| || Sbjct 605450 TTGTTTCAGAATGCAGATCTTTGTGAAAACGCTGACTGGTAAAACTATCACCCTTGAGGT 605509 Query 28604 GGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCC 28663 ||||| || || || | | || | || || ||| || || || ||| | || Sbjct 605510 TGAACCATCTGACACCATCGAGAATGTTAAAGCCAAGATCCAAGATAAGGAAGGAATTCC 605569 Query 28664 CGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGC 28723 | ||| ||||| ||| | |||||||| || |||||| |||||||| ||| || | Sbjct 605570 CCCAGACCAACAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTC 605629 Query 28724 CGATTATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||||||||||||||||| || || ||| |||| Sbjct 605630 AGATTATAACATTCAAAAAGAATCCACACTCCACTTGGT 605668 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| |||| || || || |||||| ||| ||||| || Sbjct 606144 ATGCAGATCTTTGTCAAAACTCTAACTGGAAAGACAATTACCTTGGAAGTTGAACCATCC 606203 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | || |||||| ||||||||||| | ||| ||| ||| Sbjct 606204 GACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACCAA 606263 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | ||||| || || |||||| |||||||| ||| || | ||||||||| Sbjct 606264 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGATTATAAC 606323 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| ||||||||||| || || |||| Sbjct 606324 ATTCAGAAAGAATCTACGCTTCATTTGGT 606352 >seq805 Length=567825 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| ||||| | ||| || || ||||| || ||| ||||| || Sbjct 473590 ATGCAAATATTTGTCAAAACTTCAACTGGAAAGACCATAACGTTAGAAGTTGAACCATCT 473649 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | || |||||| ||||||||||| | || ||| ||| Sbjct 473650 GACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCGCCAGACCAA 473709 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | ||||| || || |||||| |||||||| ||| || | | ||||||| Sbjct 473710 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGCTTATAAC 473769 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||||| | |||||| || || ||| |||| || Sbjct 473770 ATTCAGAGAGAATCCACACTCCACTTGGTTTT 473801 >seq253 Length=804807 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || ||||| || ||||| ||||| || || ||||| ||||| || || |||||| Sbjct 281597 AAGATGCAGATCTTTGTTAAAACTTTGACTGGTAAGACCATCACTCTTGAGGTCGAACCT 281538 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || | ||| || || |||| |||||| | || |||| Sbjct 281537 TCGGATACCATCGAAAATGTTAAGGCTAAGATTCAAAACAAGGAGGGAATTCCACCAGAT 281478 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 |||||| | | || ||||| || ||||||||||||||| ||| || | || || Sbjct 281477 CAACAGCGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGACGTACTTTGTCGGACTAC 281418 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || || ||||| ||||||||||| ||| | ||||| |||| | ||||| Sbjct 281417 AATATACAAAAGGAATCTACTCTTCACCTTGTATTGCGATTGAGGGGAGG 281368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425278331539947