Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq74 109 7e-19 seq160 93.3 5e-14 >seq74 Length=1577532 Score = 109 bits (120), Expect = 7e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 |||||||| || || || ||||| |||||||||||||| |||| ||| |||||||| || Sbjct 1092367 GAGACTGGTACTCCTTACATGCTCTACAAGGATGCTTGCAACAGGAAAAGTAACCAGCAG 1092426 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||| | || || ||||||||| || | |||||||| ||| | ||||| || Sbjct 1092427 AATCTTGGCACGATCAAGAGCAGCAACTTGTGCACGGAGATTATCGAGTATACCTCCCCC 1092486 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGC 76059 |||||| ||||| ||||| ||||| || ||||| Sbjct 1092487 GATGAGGTCGCTGTGTGCAACTTGGCCTCCATCGC 1092521 >seq160 Length=904994 Score = 93.3 bits (102), Expect = 5e-14 Identities = 178/256 (70%), Gaps = 5/256 (2%) Strand=Plus/Minus Query 64976 AAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAAT 65035 ||||||| | || || | |||||| |||| | || ||| | | ||| |||||||| | Sbjct 789072 AAAAGAAT-ATTTGTTCAACGCCATCGAAACGATGCCTTGTGTAGCGAAAAAGGCGAATT 789014 Query 65036 GGGCAATGAAATGGTTTGACAC-AAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTT 65094 |||| | || ||| | | | ||| ||| | | ||||| || || || | || || Sbjct 789013 GGGCCCTCAATTGGATAAGCTCCAAAAGCTC-CACTTTCGCTGAACGAATTGTAGCTTTC 788955 Query 65095 GCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAA 65153 || || || || || || ||||| || | || ||| ||||| | ||||||||||| Sbjct 788954 GCTGCAGTTGAAGGGATATTTTTCTCTGG-TAGTTTTGCAGCTATATTCTGGTTGAAGAA 788896 Query 65154 GCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCT 65213 ||| ||| | |||||||| || |||||||||||| | |||||| | ||||| ||| | Sbjct 788895 GCGTGGTTTGATGCCAGGTTTAACTTTCTCAAATGAATTGATTTCCAGGGATGAAGGTTT 788836 Query 65214 CCACCAGGAGTTTGCC 65229 || || |||||| Sbjct 788835 GCATTGTGACTTTGCC 788820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596387698471840