Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq318 141 2e-28 seq253 120 5e-22 seq805 104 4e-17 seq199 86.0 1e-11 >seq318 Length=663677 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| |||| || | ||| | ||||| ||| ||||| || Sbjct 605689 ATACCACCACGGAGACGAAGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCT 605630 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || |||| ||| || | ||||||||| ||||| || ||||| ||||| || || Sbjct 605629 GACAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGG 605570 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| || |||| ||| | ||| || || || || | ||| Sbjct 605569 GGAATTCCTTCCTTATCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCA 605510 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || ||||||||||| || |||||||| ||||| || |||||| Sbjct 605509 ACCTCAAGGGTGATAGTTTTACCAGTCAGCGTTTTCACAAAGATCTGCATT 605459 >seq253 Length=804807 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| || |||||||| | ||| || || | |||| || || ||||| ||||| || Sbjct 281367 ACCTCCCCTCAATCGCAATACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGA 281426 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | ||| || |||||||| || ||||||||||| | ||||||||| || || Sbjct 281427 CAAAGTACGTCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGG 281486 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||| || || | ||| || || | || | |||| || ||||| |||| || || Sbjct 281487 AATTCCCTCCTTGTTTTGAATCTTAGCCTTAACATTTTCGATGGTATCCGAAGGTTCGAC 281546 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| || || ||||| || | ||||| ||||| || ||||| || Sbjct 281547 CTCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCATCTT 281597 >seq805 Length=567825 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | |||| |||| || | ||| | ||| | ||| ||||| | Sbjct 473819 ATACCACCACGGAGACGAAAAACCAAGTGGAGTGTGGATTCTCTCTGAATGTTATAAGCT 473760 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || |||| ||| || | ||||||||| || || || ||||| ||||| || || Sbjct 473759 GACAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGC 473700 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| ||||| ||||| | ||| | || || || || || | ||| Sbjct 473699 GGAATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCA 473640 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||| ||||| || || || ||| ||||| |||||||||||||| Sbjct 473639 ACTTCTAACGTTATGGTCTTTCCAGTTGAAGTTTTGACAAATATTTGCAT 473590 >seq199 Length=980398 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/193 (69%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAA-------- 193230 ||||| ||||| || || || | ||| || |||||||| || ||||||| Sbjct 850365 ATATTGTAGTCCGACAAAGTACGTCCATCTTCCAATTGTTTACCAGCAAAAATGCAAAAA 850306 Query 193231 TTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTA 193290 |||| | |||||| || || || ||||| || || ||||| || || | || | |||| Sbjct 850305 TTAAACACTGTTGGTCTGGTGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTAACATTTT 850246 Query 193291 AAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAA 193350 || |||| ||||| | || || ||||| || || ||||| || | ||||| |||| Sbjct 850245 CGATGATATCCGAAGATCCGACCTCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAA 850186 Query 193351 ATATTTGCATTTT 193363 | || ||||| || Sbjct 850185 AGATCTGCATCTT 850173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899380084127760